CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES07083
KXG26554

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	EES05647	AT3G27960.1	21798944
AT1G55890.1	EES07083	AT4G24690.1	21798944
AT1G55890.1	KXG26554	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012606_P001	Maize	mitochondrion	83.83	81.24
EER95222	Sorghum	mitochondrion	81.32	72.41
EES01579	Sorghum	mitochondrion	60.14	61.54
HORVU3Hr1G077400.1	Barley	cytosol	53.08	60.84
TraesCS3A01G324200.1	Wheat	plastid	56.95	54.95
TraesCS3B01G353300.1	Wheat	plastid	51.71	54.31
TraesCS3A01G324300.1	Wheat	plastid	53.3	54.17
Os01t0785700-01	Rice	mitochondrion	53.53	54.15
TraesCS3A01G331700.1	Wheat	plastid	52.16	53.63
TraesCS3B01G361800.1	Wheat	plastid	53.08	53.08
TraesCS3D01G317700.1	Wheat	plastid	56.95	52.97
TraesCS3A01G324500.1	Wheat	plastid	56.26	52.22
TraesCS3D01G325200.1	Wheat	plastid	53.3	52.12
HORVU3Hr1G077440.2	Barley	mitochondrion	56.95	50.92
TraesCS3A01G331600.1	Wheat	plastid	52.62	50.33
TraesCS3D01G317800.1	Wheat	plastid	56.95	49.7
HORVU6Hr1G019320.1	Barley	plastid	52.39	49.57
TraesCS3B01G353500.1	Wheat	plastid	55.81	48.71
GSMUA_Achr10P...	Banana	mitochondrion	39.18	42.89
VIT_00s0271g00040.t01	Wine grape	cytosol	19.59	42.16
VIT_00s0274g00040.t01	Wine grape	mitochondrion	33.26	38.22
VIT_00s0271g00080.t01	Wine grape	mitochondrion	31.21	37.74
PGSC0003DMT400012953	Potato	cytosol	31.44	36.41
VIT_00s0271g00070.t01	Wine grape	mitochondrion	31.44	36.41
Bra039373.1-P	Field mustard	cytosol	22.55	36.13
Solyc03g031460.1.1	Tomato	plastid	30.98	35.88
KRH41973	Soybean	nucleus	30.52	35.17
PGSC0003DMT400071165	Potato	extracellular	13.67	34.09
VIT_00s0271g00050.t01	Wine grape	mitochondrion	17.54	33.92
KRH49916	Soybean	cytosol	30.07	33.0
CDY24208	Canola	mitochondrion	28.7	31.98
CDY43367	Canola	mitochondrion	28.7	31.98
CDY08267	Canola	mitochondrion	28.7	31.74
Bra037096.1-P	Field mustard	mitochondrion	28.7	31.74
CDX82550	Canola	mitochondrion	28.25	31.55
AT3G13160.1	Thale cress	mitochondrion	28.25	31.47
CDY66550	Canola	mitochondrion	21.41	31.44
Bra001492.1-P	Field mustard	mitochondrion	28.47	31.25
CDY26081	Canola	mitochondrion	28.02	31.06
AT1G55890.1	Thale cress	mitochondrion	27.56	30.4
PGSC0003DMT400055888	Potato	mitochondrion	25.28	29.44
Solyc02g079830.1.1	Tomato	mitochondrion	26.65	29.25
PGSC0003DMT400055889	Potato	plastid	25.97	29.01
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.13	26.84
EES01589	Sorghum	mitochondrion	21.87	24.49
CDY24210	Canola	plastid	24.37	24.43
CDY43368	Canola	plastid	24.37	24.37
EES07814	Sorghum	mitochondrion, plastid	23.23	24.34
Bra039372.1-P	Field mustard	cytosol, plastid	24.83	22.8
EER91465	Sorghum	mitochondrion	22.78	22.73
EES05467	Sorghum	mitochondrion	22.55	21.15
EES15434	Sorghum	plastid	22.1	20.86
AT3G13150.1	Thale cress	plastid	25.51	20.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5XLS8	EnsemblPlants:EES01580	ProteinID:EES01580	ProteinID:EES01580.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G320200	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A84412	RefSeq:XP_002456460.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:64801955..64803314

Molecular Weight (calculated)

48479.7 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.472

Length

439 amino acids

Sequence
(BLAST)

001: MASPAAASPA RRLFSTKPRT RPPKPAPEPA QASKAPAGQA AAKPDERRES RSLNKTLKAI FRERDPDKAG VPHRVYEVAV ARLASFGRHD AIAAIIDSQK
101: PFIEASSVGF AARLVRLCGG ASMPSHAAAI FHGLPPKHKS VMTFNALLAA YVDASDFDAL TTTFQQIPAS HPTIIPTVYS YNILISALCQ KPELSAALDV
201: IALMEKRGVS PDIISFNILL NGFYNNDSFD DAEKVWEMMK ERNIEPDEKS YNAKLRGLVS QGRVEDAVAL IERMQKEGPK PDSVSYNELI RGYCKEGRLN
301: EAKKVYDDLI KNECAPNRGT FHTLVPHLVE AGELDRALSC CHEIFSRKCR VHCSLLQGVV TALIAASRMG EAKRIVHLGR KNYYPQKHLR MPPHTRKDEG
401: LKMPQPAGED NDVEAETDSE DSVSYEDGYK EEEESNNAQ

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.