CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU80396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	OQU80396	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017072_P002	Maize	nucleus	77.27	77.91
PGSC0003DMT400019556	Potato	extracellular	6.83	59.18
Os02t0593700-01	Rice	nucleus	57.95	58.22
TraesCS6B01G236800.1	Wheat	cytosol	55.71	54.56
HORVU6Hr1G053250.1	Barley	cytosol	54.53	53.9
TraesCS6A01G208300.2	Wheat	nucleus	54.77	53.45
TraesCS6D01G191900.3	Wheat	nucleus	52.89	51.31
Zm00001d040272_P001	Maize	plastid	7.18	50.83
GSMUA_AchrUn_...	Banana	extracellular	6.95	39.86
CDY08946	Canola	plastid	29.56	38.67
Bra013825.1-P	Field mustard	plastid	30.15	36.47
CDY34302	Canola	plastid	29.92	36.18
Bra010484.1-P	Field mustard	plastid	28.98	36.07
CDY24845	Canola	plastid	28.62	36.0
KXG26554	Sorghum	nucleus	37.81	35.87
CDY11029	Canola	plastid	28.5	35.75
CDX92649	Canola	cytosol	29.09	35.75
CDY03427	Canola	cytosol	29.68	35.74
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	29.21	35.23
Bra019212.1-P	Field mustard	plastid	28.5	35.07
PGSC0003DMT400069639	Potato	nucleus	29.92	34.56
Solyc06g071770.2.1	Tomato	nucleus	29.68	34.19
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	31.8	31.25
PGSC0003DMT400046670	Potato	nucleus	31.45	30.97
VIT_17s0000g09280.t01	Wine grape	nucleus	30.39	29.66
KRH57136	Soybean	nucleus	29.8	28.82
KRH03220	Soybean	nucleus	26.15	27.34

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EntrezGene:8070589
UniProt:C5XWH2	EnsemblPlants:EES07083	ProteinID:EES07083	ProteinID:EES07083.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940
InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158
PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	SMART:SM00291
SMART:SM00666	EnsemblPlantsGene:SORBI_3004G200200	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	unigene:Sbi.14485
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001A85DDB	RefSeq:XP_002454107.1	InterPro:Znf_ZZ	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:55077813..55083163

Molecular Weight (calculated)

92554.8 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.414

Length

849 amino acids

Sequence
(BLAST)

001: MSDRSSSAGP TFFPFGPQAE AWDVTFKVKY GDTLKRFYGC ANGNHFDMNL SALRAKIATA FKFGSDADFI LTYTDEDGDI VMLDDDDDLR DAALRQKLNP
101: LRITVQLKKN QPTDKKDVSA PVKPITQDSL SQIMSAIEFL KPVQEDSLAH IKSAIGEAIK SVPEPIPDAL AKLSHEILDA APPPLAELMK PFAQLMAPNN
201: NGNGPSDVHA EGSSTSSSGV TQTPAPAPAP VPAEAKNEPK VTPSLGLRAV FKEAASPVPN AGASQVQQPS MYPSVEELLF PRNSVDKPVC KGKTDAQSKG
301: KSVMSSLTQP APYSLPTHAP PPPPPCISEW SRPRRSLQHP WQYEDNAKAT SDSRWRIPMY KMPYAPPPPA VPPPGYGPSP HFPYPGRLLS SGHPYGDLAG
401: NMENSAQRSL HRWIQCDGCG VQPIVGPRYK SNVKEDYDLC DSCFQRMGNE MEYTKIDKPI SPHKFLRDPH ATRKVHHTRV LMKSKREKLE SRFILDVTVL
501: DGTLMTPSTS FTKIWRMHNN GSVVWPLGTQ LIWVGGDQFA LQSSVPLEIP VDGFPVDKEI DVAVDFVAPR RPGRYISYWR LASPSGQKFG QRVWVHIQVE
601: DPSFVNDNNR SAAINLNLPP ESNSANTTNL IDVNIEPVDS ALTAKRTKEF HFCSTDVSGP KKSLPATLVA TSSSAAAPAN PTGDVPMSSA PAAAFVPSVN
701: VPMPEVVTHT PSPAMPVLPT TIPMSAPVSA PAIAPVSASG AVPAPPPVSA VVPELSDLDV HNEEKLLREL EEMGFRQIDL NKEILRQNNY NLEQSVDDLC
801: GVNEWDPLLA ELEEMGFDDT EVNKELLAKN GGSIKRAVMD LIAREKKDK

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.