Factsheet for PGSC0003DMT400069639

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400046377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	PGSC0003DMT400046377	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071770.2.1	Tomato	nucleus	91.84	91.59
PGSC0003DMT400019556	Potato	extracellular	8.03	60.2
PGSC0003DMT400046670	Potato	nucleus	51.29	43.74
CDY08946	Canola	plastid	35.65	40.37
Bra010484.1-P	Field mustard	plastid	36.73	39.59
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	37.41	39.06
CDY24845	Canola	plastid	35.78	38.96
CDY34302	Canola	plastid	36.87	38.6
Bra013825.1-P	Field mustard	plastid	36.73	38.46
CDY03427	Canola	cytosol	36.87	38.44
CDY11029	Canola	plastid	35.1	38.11
Bra019212.1-P	Field mustard	plastid	35.37	37.68
CDX92649	Canola	cytosol	35.24	37.48
GSMUA_AchrUn_...	Banana	extracellular	7.07	35.14
VIT_17s0000g09280.t01	Wine grape	nucleus	40.68	34.37
KRH57136	Soybean	nucleus	40.0	33.49
GSMUA_Achr9P01840_001	Banana	nucleus	35.78	31.42
Os02t0593700-01	Rice	nucleus	36.05	31.36
KRH03220	Soybean	nucleus	34.15	30.91
Zm00001d040272_P001	Maize	plastid	4.9	30.0
EES07083	Sorghum	nucleus	34.56	29.92
Zm00001d017072_P002	Maize	nucleus	33.88	29.57
TraesCS6A01G208300.2	Wheat	nucleus	34.69	29.31
HORVU6Hr1G053250.1	Barley	cytosol	34.01	29.1
TraesCS6B01G236800.1	Wheat	cytosol	34.29	29.07
TraesCS6D01G191900.3	Wheat	nucleus	32.11	26.97
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	30.88	26.55
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	30.61	26.35
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	30.61	26.29
Os04t0476800-01	Rice	nucleus	31.29	26.11
Zm00001d003300_P001	Maize	nucleus	26.39	25.97
KXG26554	Sorghum	nucleus	31.56	25.92
HORVU2Hr1G082590.15	Barley	nucleus	31.7	25.69

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:102585254	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270	InterPro:IPR000433
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1CKU0	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom
PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	EnsemblPlantsGene:PGSC0003DMG400027073	PGSC:PGSC0003DMG400027073	EnsemblPlants:PGSC0003DMT400069639
PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666
SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI00029603E0	RefSeq:XP_006347428.1
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027073]

Coordinates

chr6:+:52585724..52590128

Molecular Weight (calculated)

80412.3 Da

IEP (calculated)

5.225

GRAVY (calculated)

-0.403

Length

735 amino acids

Sequence
(BLAST)

001: MESSIVIKVK YGETLRRFNA RVADDKLGLN IDELKDKIFK LFNFPPDSEL TLTYIDEDGD VVTLVDDEDL QDITRQDLDP LRISVNTEKL SRSSGTSSEN
101: STSVRAPPTF PNINSSVSDL LKSLPKSKSK KILKHSADMA SKASSAAREI AELSKALSMT GLSYLKQACP VSGVPMGSVR SGEPSQAANP EELTVKTAGQ
201: PKSHTVSINA SELKSSQSDQ NGIQCEPLSK SPNRNSSLVD GKKEEGNKFG DSHLVGKALG NSYPSASTTG PKKTADKQQT ENHPGAEPVG VVGLSGKLSG
301: GFRSPSSYFM TMVPELNDTI QPQYSPFQIP VKRSHNHSDG TVSIFHRGVR CDGCGVHPIT GPRFKSKVKE DYDLCSICFA RMGIDADYIR MDRPVSYHHP
401: IAFKALHEPR DIFQGCGVKS PKLDSRFKQD VNVLDGTMMA PSTPFTKVWR MKNNGNIVWP QGTQLVWIGG DRLGDAVSVE LQISSFGLAV DHELDVAVDF
501: TAPKLPGRYI SYWRMALPSG EKFGQRVWVL IQVDFSMIPK KEFFYEASQV LDLNLPPAGY DIAGSESINV NADMTIEDII ADPKISNPAM ESVEPVVDGN
601: RNNEESKSCI SPSAAGSSIS YPIYLSKAAP AVTSVAPPSV VEVQASSQED VEMALLKELE DMGFTQVNLN KEVLRMNEYN LEQAVADLCG VSEWDPMLEE
701: LEEMGFHNKE MNKELLKKNN GSIKRVVMDL IAGEN

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.