Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G078670.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24690.1 | HORVU7Hr1G078670.4 | AT4G29820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G335900.1 | Wheat | mitochondrion, nucleus, plastid | 74.64 | 79.18 |
| TraesCS2B01G355000.6 | Wheat | cytosol, nucleus, plastid | 73.54 | 78.1 |
| TraesCS2A01G327000.1 | Wheat | cytosol, nucleus, plastid | 72.44 | 76.75 |
| Os04t0476800-01 | Rice | nucleus | 40.9 | 42.11 |
| GSMUA_AchrUn_... | Banana | extracellular | 6.5 | 39.86 |
| KXG26554 | Sorghum | nucleus | 36.6 | 37.09 |
| HORVU6Hr1G053250.1 | Barley | cytosol | 34.95 | 36.9 |
| Zm00001d003300_P001 | Maize | nucleus | 30.32 | 36.81 |
| CDY08946 | Canola | plastid | 25.47 | 35.59 |
| CDY11029 | Canola | plastid | 25.25 | 33.83 |
| Bra010484.1-P | Field mustard | plastid | 25.36 | 33.72 |
| PGSC0003DMT400019556 | Potato | extracellular | 3.64 | 33.67 |
| Bra019212.1-P | Field mustard | plastid | 25.03 | 32.9 |
| CDY24845 | Canola | plastid | 24.26 | 32.59 |
| CDY03427 | Canola | cytosol | 25.25 | 32.48 |
| CDY34302 | Canola | plastid | 25.14 | 32.48 |
| CDX92649 | Canola | cytosol | 24.7 | 32.42 |
| Bra013825.1-P | Field mustard | plastid | 24.92 | 32.19 |
| AT4G24690.1 | Thale cress | cytosol, nucleus, plastid | 24.81 | 31.96 |
| Solyc06g071770.2.1 | Tomato | nucleus | 25.91 | 31.89 |
| PGSC0003DMT400069639 | Potato | nucleus | 25.69 | 31.7 |
| KRH03220 | Soybean | nucleus | 25.91 | 28.94 |
| PGSC0003DMT400046670 | Potato | nucleus | 27.23 | 28.65 |
| Solyc03g112230.2.1 | Tomato | cytosol, nucleus, plastid | 27.01 | 28.36 |
| KRH57136 | Soybean | nucleus | 26.9 | 27.79 |
| VIT_17s0000g09280.t01 | Wine grape | nucleus | 24.92 | 25.98 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.3.4.2 | Gene3D:2.60.40.10 | Gene3D:3.10.20.90 | Gene3D:3.30.60.90 | UniProt:A0A287INE3 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008270 | EnsemblPlantsGene:HORVU2Hr1G082590 |
| EnsemblPlants:HORVU2Hr1G082590.15 | InterPro:IPR000270 | InterPro:IPR000433 | InterPro:IPR013783 | InterPro:IPR015940 | InterPro:Ig-like_fold |
| InterPro:N_BRCA1_central | InterPro:PB1_dom | PFAM:PF00564 | PFAM:PF00569 | PFAM:PF16158 | PFscan:PS50030 |
| PFscan:PS50135 | PFscan:PS51745 | PANTHER:PTHR20930 | PANTHER:PTHR20930:SF3 | SMART:SM00291 | SMART:SM00666 |
| SUPFAM:SSF46934 | SUPFAM:SSF54277 | SUPFAM:SSF57850 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI000B47E84D |
| InterPro:Znf_ZZ | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:599026332..599031507
Molecular Weight (calculated)
92570.5 Da
IEP (calculated)
5.955
GRAVY (calculated)
-0.308
Length
907 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LRGPVPLGRR PRDLVIKVKY GGTLKRFGAS VNGSNLDHNL AALRLKIANA
101: FKFSPDDELI LTYTDEDGDV VMLDDDDDLR DAAVSQELNP LRIDVQLKSS SAGAPQPNQQ VLNSRSKMSA AMEDQLAQVK SAIDEALKFV PEQVPAVLAK
201: LSHELRSKAA SSASPVHELL DCIAKLVTPK SGMQPTRGLS DSSSGSSNGN LQTVRDIKNN HASESATVSA SHSQHAKSSG ALGLKSVLVE KTNAQVQQAP
301: GCTSTGVPSV LVGSGGKLWY HKKRTDALSK GKSHAQSIGK PVISSSVPPV PSFALGGSTL GSANGYMPFG SVGKINGDSS SAFPPPRGPP ISSIPAFETS
401: PRLPSYCPVP THGLQKAFPP PPAHDYNQFR FSRPSSVNPY GIYQDPYSFG SYSGYGIPQQ SIHKWVECDG CGVTPIVGSR FKSTVKHNYD LCCACFYRMG
501: NEAEYTRMDK PLSVSERLRN LNKDKRFLQL DCRFVKDLTV PDGTRMAPST PFRKIWSMRN NGTIVWPYGT HLAWVGGDEF ARQSSVKLAV PEAGFPLDGE
601: IDVYVDFVSP AKPGRYISYW RLTSPDLQKF GQQVWVLIEV EQPVRASGDN QTAAIDLNLP ADSNPTTLRP SIVQRRPLNF LNLPAEGSTA TWTTDSASDN
701: DEDGVSLCDV IATLGRKGSK AVGSVVPPAP AAHEPVHVPM AYPQAEPVQV PIAYPQAEPV QVPIAYPQAA DEPVQAPVVY SQAADEPVQV PVAYPQASSA
801: EALGMPAGVP APEAAPLMEH ISMPEPLPAA ILDNSHVAPV SMPLPDETIN NDMEENLLRE LVDMGFRQVD LNKEVLRQNE YDLQKSVDDL CGFHEWDPLL
901: VELKELI
101: FKFSPDDELI LTYTDEDGDV VMLDDDDDLR DAAVSQELNP LRIDVQLKSS SAGAPQPNQQ VLNSRSKMSA AMEDQLAQVK SAIDEALKFV PEQVPAVLAK
201: LSHELRSKAA SSASPVHELL DCIAKLVTPK SGMQPTRGLS DSSSGSSNGN LQTVRDIKNN HASESATVSA SHSQHAKSSG ALGLKSVLVE KTNAQVQQAP
301: GCTSTGVPSV LVGSGGKLWY HKKRTDALSK GKSHAQSIGK PVISSSVPPV PSFALGGSTL GSANGYMPFG SVGKINGDSS SAFPPPRGPP ISSIPAFETS
401: PRLPSYCPVP THGLQKAFPP PPAHDYNQFR FSRPSSVNPY GIYQDPYSFG SYSGYGIPQQ SIHKWVECDG CGVTPIVGSR FKSTVKHNYD LCCACFYRMG
501: NEAEYTRMDK PLSVSERLRN LNKDKRFLQL DCRFVKDLTV PDGTRMAPST PFRKIWSMRN NGTIVWPYGT HLAWVGGDEF ARQSSVKLAV PEAGFPLDGE
601: IDVYVDFVSP AKPGRYISYW RLTSPDLQKF GQQVWVLIEV EQPVRASGDN QTAAIDLNLP ADSNPTTLRP SIVQRRPLNF LNLPAEGSTA TWTTDSASDN
701: DEDGVSLCDV IATLGRKGSK AVGSVVPPAP AAHEPVHVPM AYPQAEPVQV PIAYPQAEPV QVPIAYPQAA DEPVQAPVVY SQAADEPVQV PVAYPQASSA
801: EALGMPAGVP APEAAPLMEH ISMPEPLPAA ILDNSHVAPV SMPLPDETIN NDMEENLLRE LVDMGFRQVD LNKEVLRQNE YDLQKSVDDL CGFHEWDPLL
901: VELKELI
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
Arabidopsis Description
NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.