CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12461
KRH37445

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	KRH12461	AT4G29820.1	21798944
AT4G24690.1	KRH37445	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03220	Soybean	nucleus	66.29	71.67
PGSC0003DMT400019556	Potato	extracellular	7.18	64.29
CDY08946	Canola	plastid	33.37	45.15
CDY24845	Canola	plastid	34.05	44.3
Bra010484.1-P	Field mustard	plastid	33.94	43.7
CDY03427	Canola	cytosol	34.85	43.4
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	34.4	42.9
CDY34302	Canola	plastid	34.28	42.88
Bra013825.1-P	Field mustard	plastid	34.05	42.59
Bra019212.1-P	Field mustard	plastid	32.8	41.74
CDY11029	Canola	plastid	32.12	41.65
CDX92649	Canola	cytosol	32.57	41.39
PGSC0003DMT400069639	Potato	nucleus	33.49	40.0
Solyc06g071770.2.1	Tomato	nucleus	33.14	39.48
PGSC0003DMT400046670	Potato	nucleus	37.81	38.52
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	36.67	37.27
VIT_17s0000g09280.t01	Wine grape	nucleus	35.88	36.21
GSMUA_AchrUn_...	Banana	extracellular	6.04	35.81
Os02t0593700-01	Rice	nucleus	32.57	33.85
GSMUA_Achr9P01840_001	Banana	nucleus	30.3	31.78
HORVU6Hr1G053250.1	Barley	cytosol	29.73	30.38
TraesCS6B01G236800.1	Wheat	cytosol	29.73	30.1
Zm00001d017072_P002	Maize	nucleus	28.7	29.93
EES07083	Sorghum	nucleus	28.82	29.8
TraesCS6A01G208300.2	Wheat	nucleus	29.5	29.77
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	27.45	28.19
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	27.33	28.04
TraesCS6D01G191900.3	Wheat	nucleus	27.9	28.0
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	27.11	27.87
HORVU2Hr1G082590.15	Barley	nucleus	27.79	26.9
Zm00001d040272_P001	Maize	plastid	3.64	26.67
Os04t0476800-01	Rice	nucleus	25.17	25.09
KXG26554	Sorghum	nucleus	25.4	24.92
Zm00001d003300_P001	Maize	nucleus	20.96	24.63

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100778692	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90
EMBL:ACUP02002814	EnsemblPlantsGene:GLYMA_05G041600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130
InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	UniProt:K7KMT5
EnsemblPlants:KRH57136	ProteinID:KRH57136	ProteinID:KRH57136.1	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom
PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745
PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277
SUPFAM:SSF57850	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00023C516A	InterPro:Znf_ZZ	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:3731506..3736034

Molecular Weight (calculated)

95064.9 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.372

Length

878 amino acids

Sequence
(BLAST)

001: MDSALVIKVK YGDTLRRFSA HVDENNRLDL DMVGLRAKIC SIFSFSADEN LILRYVDEDG DLVTLVDDDD LRDVMRQQLK FLRIDVHMNN DGGDKSNAGS
101: SGSATPSETC PVTSPFLLRN AMVREHLSKK AASSSPVVDN LANSILKMGL NSHFQPPDTA GKSSKTGVPE EPITKAMGPQ SSHVDSASNA SVNSDSATPI
201: RSPIPNPYLS GNAVKVDVSC SVPEPVRQFF SKSSSSNAAA SSSQLPANLA DLISLVPEPV REFLSNLSHS NAASSNQLPV NLTDLVSLLG QSILNSHCQP
301: HVATGPFAKN GVTEEPITSE ARGQQIPSAD SASNATQQVE AGVATIDLNA PPFDPFLAQF TCENKAPLSS EAPNGHGKKG KMPTVDSSAG KGDSSGISSS
401: FAAPNNSTQT TSLTSGAFIE CPFAGTYINS WTPLPGNSQM PPFKRSHSHT DAMSGMFHKG VRCDGCGVYP ITGPRFKSKV KENYDLCNIC FNEMGNGTDY
501: IRMDRPASAR APRYLHGHTK NFPTLPPHIF KKGAILKHAK PKLDSRFILD VNVIDGTMMA PSTAFTKIWR MRNNGTIVWH KGTQLVWIGG DKFSDSHSVD
601: LEVPEDGVPL EKELDIAVDF TAPPLPGRYI SYWRMTTPSG HQFGQRVWVL IQVDASLKDS FYDNSQGLNL NIPLDISGSK GPHIIDINVQ PTEDDTVLQT
701: RKPNAPIEPL NQMVDEEPRL ELENEFPINE ATFVAPVASA PAATSVASSS VPCPIIDLSE TTPAVPSNQQ SPTVDVPSSS MGTGGGINSV EENLLKELEE
801: MGFKQVDLNK EILRKNEYDL DQSLDALCGV DVCGVSEWDH MLEELQEMGF RDKEMNKRLL EKNNGSLKRV VMDLINGE

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.