CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95402
KRH12930
KRH13873
KRH28829
KRH37905
KRH38083
KRH43419
KRH67080
KRH71831

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	KRG95402	AT5G06710.1	21798944
AT4G29820.1	KRH13873	AT5G06710.1	21798944
AT4G29820.1	KRH38083	AT5G06710.1	21798944
AT4G29820.1	KRH43419	AT5G06710.1	21798944
AT4G29820.1	KRH67080	AT5G06710.1	21798944
AT4G29820.1	KRH71831	AT5G06710.1	21798944
AT4G29820.1	KRH12930	AT5G58040.1	16282318
AT4G29820.1	KRH37905	AT5G58040.1	16282318
AT4G29820.1	KRH12930	AT5G58040.1	18479511
AT4G29820.1	KRH37905	AT5G58040.1	18479511
AT4G29820.1	KRH28829	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37445	Soybean	nucleus	54.73	72.0
PGSC0003DMT400046377	Potato	cytosol	40.2	58.91
Solyc07g041000.2.1	Tomato	cytosol	39.53	57.92
AT4G29820.1	Thale cress	cytosol	41.55	55.41
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	9.12	55.1
CDX88086	Canola	cytosol, mitochondrion, peroxisome	9.12	55.1
CDY43528	Canola	cytosol	40.2	54.84
Bra011138.1-P	Field mustard	cytosol	40.54	54.79
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	10.14	54.55
GSMUA_Achr3P26260_001	Banana	cytosol	37.84	52.09
TraesCS7D01G325500.1	Wheat	cytosol	33.45	46.7
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	33.11	46.23
VIT_11s0016g01760.t01	Wine grape	plastid	45.27	46.05
Zm00001d050266_P001	Maize	cytosol	34.46	45.54
OQU80396	Sorghum	cytosol	36.49	45.38
Os08t0398800-02	Rice	cytosol	34.46	45.13
KRG91493	Soybean	endoplasmic reticulum, nucleus	30.41	45.0
CDX68589	Canola	plastid	41.22	42.96
CDX85073	Canola	cytosol, extracellular, nucleus	29.73	41.31
TraesCS7B01G229300.1	Wheat	cytosol	32.77	39.59
HORVU7Hr1G078670.4	Barley	plastid	34.12	39.15
KRH35335	Soybean	cytosol	9.12	36.99

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A0R0G2B9	EMBL:ACUP02009319	InterPro:Cleav_polyA_spec_factor_su5	EnsemblPlantsGene:GLYMA_15G172700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849
GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:IPR000086	EnsemblPlants:KRH12461	ProteinID:KRH12461	ProteinID:KRH12461.1	InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom
PFAM:PF13869	PFscan:PS51462	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	SUPFAM:SSF55811	UniParc:UPI0006EE096B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:15808233..15814389

Molecular Weight (calculated)

33659.4 Da

IEP (calculated)

9.908

GRAVY (calculated)

-0.123

Length

296 amino acids

Sequence
(BLAST)

001: MKWFTISTSR HDTNKVVCGT HPLGGMPTNC RRRRRRSATA LHDPNSGNDD QSLEFDIYPL SSYYFGSKDA FPSKYLTSAD RVLRMKSNYA ARGIRTCVEA
101: VVLVELFKHP HLLLLQIRNS IYKLPGGRLR PGESDTDGLK RKLARKLSII EDGDGSEWEV GECLEMWWRP DFETLVFPCL PPNVKQTKEC IKVFLVKLPE
201: SRKFIVPKNM RLLAVPLCQV HENHKSSSGL IRQPLLVSIL SSCGVQTQTC IYHIFDTKNY TVMLKITACI ILASSPLVVS RHRLVCVIAF IRKIIL

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.