Factsheet for Zm00001d050266_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004138_P001
Zm00001d005875_P001
Zm00001d013380_P001
Zm00001d020670_P001
Zm00001d027720_P001
Zm00001d031745_P001
Zm00001d033843_P007
Zm00001d034978_P001
Zm00001d052760_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	Zm00001d005875_P001	AT5G06710.1	21798944
AT4G29820.1	Zm00001d020670_P001	AT5G06710.1	21798944
AT4G29820.1	Zm00001d031745_P001	AT5G06710.1	21798944
AT4G29820.1	Zm00001d013380_P001	AT5G58040.1	16282318
AT4G29820.1	Zm00001d033843_P007	AT5G58040.1	16282318
AT4G29820.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT4G29820.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT4G29820.1	Zm00001d004138_P001	AT5G66110.1	21798944
AT4G29820.1	Zm00001d027720_P001	AT5G66110.1	21798944
AT4G29820.1	Zm00001d034978_P001	AT5G66110.1	21798944
AT4G29820.1	Zm00001d052760_P001	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80396	Sorghum	cytosol	80.36	75.63
Os08t0398800-02	Rice	cytosol	72.32	71.68
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	67.41	71.23
TraesCS7D01G325500.1	Wheat	cytosol	66.07	69.81
TraesCS7B01G229300.1	Wheat	cytosol	66.52	60.82
GSMUA_Achr3P26260_001	Banana	cytosol	57.59	60.0
HORVU7Hr1G078670.4	Barley	plastid	66.07	57.36
Bra011138.1-P	Field mustard	cytosol	54.91	56.16
CDY43528	Canola	cytosol	53.57	55.3
PGSC0003DMT400046377	Potato	cytosol	49.55	54.95
Solyc07g041000.2.1	Tomato	cytosol	48.21	53.47
AT4G29820.1	Thale cress	cytosol	52.68	53.15
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	12.05	49.09
KRH37445	Soybean	nucleus	47.32	47.11
CDX68589	Canola	plastid	55.36	43.66
VIT_11s0016g01760.t01	Wine grape	plastid	53.12	40.89
CDX85073	Canola	cytosol, extracellular, nucleus	35.27	37.09
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	8.04	36.73
CDX88086	Canola	cytosol, mitochondrion, peroxisome	8.04	36.73
KRH12461	Soybean	plastid	45.54	34.46

Protein Annotations

EntrezGene:100280946	MapMan:16.2.1.4.1	Gene3D:3.90.79.10	ProteinID:AQK52223.1	UniProt:B8A1U0	EMBL:BT055532
InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849
GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	PFAM:PF13869
PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	UniParc:UPI000191778C	EnsemblPlantsGene:Zm00001d050266	EnsemblPlants:Zm00001d050266_P001
EnsemblPlants:Zm00001d050266_T001	SEG:seg	:	:	:	:

Description

Cleavage and polyadenylation specificity factor 5

Coordinates

chr4:+:77360985..77363033

Molecular Weight (calculated)

25041.7 Da

IEP (calculated)

8.696

GRAVY (calculated)

0.061

Length

224 amino acids

Sequence
(BLAST)

001: MGLEMVEVMS ETVPTVVPAA ARENGVDIYP LSRYYFGARD AAGVPRGLET AADRALRLKA NFAAHGLRTS VHGVLLVELF DHPHVLLLQV RNSSFLLPGG
101: RLRPGEEEVR GLKRKLSSKL SVVDDVEAVE EEDWQIGQCI GMWWRSEFEA IPFPYMPPRF RAAKECMKLF LIRLPMSRQF IVPRNMKLLA VPLSQIHGNA
201: QVYGPIIAAI PSLLSKFSFN VISD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.