Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G325500.1 | Wheat | cytosol | 83.27 | 96.23 |
| TraesCS7A01G328600.1 | Wheat | cytosol, nucleus, peroxisome | 82.86 | 95.75 |
| HORVU7Hr1G078670.4 | Barley | plastid | 75.1 | 71.32 |
| Os08t0398800-02 | Rice | cytosol | 63.67 | 69.03 |
| Zm00001d050266_P001 | Maize | cytosol | 60.82 | 66.52 |
| OQU80396 | Sorghum | cytosol | 64.08 | 65.97 |
| GSMUA_Achr3P26260_001 | Banana | cytosol | 52.24 | 59.53 |
| Bra011138.1-P | Field mustard | cytosol | 48.98 | 54.79 |
| CDY43528 | Canola | cytosol | 48.16 | 54.38 |
| AT4G29820.1 | Thale cress | cytosol | 47.76 | 52.7 |
| PGSC0003DMT400046377 | Potato | cytosol | 43.27 | 52.48 |
| Solyc07g041000.2.1 | Tomato | cytosol | 41.63 | 50.49 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 40.41 | 48.77 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 39.18 | 47.29 |
| KRH37445 | Soybean | nucleus | 41.22 | 44.89 |
| CDX88087 | Canola | cytosol, extracellular, mitochondrion, plastid | 9.8 | 43.64 |
| CDX68589 | Canola | plastid | 48.57 | 41.9 |
| VIT_11s0016g01760.t01 | Wine grape | plastid | 45.71 | 38.49 |
| CDX88086 | Canola | cytosol, mitochondrion, peroxisome | 7.35 | 36.73 |
| Bra009744.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 7.35 | 36.73 |
| CDX85073 | Canola | cytosol, extracellular, nucleus | 31.43 | 36.15 |
| KRH12461 | Soybean | plastid | 39.59 | 32.77 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | PFAM:PF13869 | PIRSF:PIRSF017888 | PANTHER:PTHR13047 | PANTHER:PTHR13047:SF1 | EnsemblPlantsGene:TraesCS7B01G229300 |
| EnsemblPlants:TraesCS7B01G229300.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:431306454..431309170
Molecular Weight (calculated)
27195.1 Da
IEP (calculated)
10.059
GRAVY (calculated)
-0.212
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEMAPVEA ERSPEQPELQ IYPLCRYYFG ARDARPCAGE TAADRALRLK ANFAARGLRT RGGPTYTQPV SQDTGIALGH RDNFVLGPPL LRTCVHGVLL
101: VELSGHPHVL LLQVRNSSFL LPGGRLRPAE QDVQGLKRKL SSKLAAADPN GDHHWQIGEC IGMWWRSEFE ARPVPYPPPS TRAPKECVKL FLVRLPMARQ
201: FVVPRNLKLL AVPLSQIHDN AQVYGPIISG IPNLLSKFSF NVVRN
101: VELSGHPHVL LLQVRNSSFL LPGGRLRPAE QDVQGLKRKL SSKLAAADPN GDHHWQIGEC IGMWWRSEFE ARPVPYPPPS TRAPKECVKL FLVRLPMARQ
201: FVVPRNLKLL AVPLSQIHDN AQVYGPIISG IPNLLSKFSF NVVRN
001: MSMTDRVLRH NKRLLQESRY SPYTLGTKEK QKHKQKEEAV QLGVELSLFV AEAMFLLSDA YYVFETYIKP KNGVYKDGGK SSQWEQFKTF SYQFSFGVRV
101: LARIVSILEI GGLVKPSGFK HYNQELKKLE EHLRSVKDVS EANGFAREAI ESSIFHLWKS LFEATPEMIH PSKTKVLELF
101: LARIVSILEI GGLVKPSGFK HYNQELKKLE EHLRSVKDVS EANGFAREAI ESSIFHLWKS LFEATPEMIH PSKTKVLELF
Arabidopsis Description
Protein of unknown function (DUF1184) [Source:TAIR;Acc:AT1G34560]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.