Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G251600.2 | |
| TraesCS3B01G281100.2 | |
| TraesCS3D01G252000.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06710.1 | TraesCS3A01G251600.2 | AT4G26100.1 | 21798944 |
| AT5G06710.1 | TraesCS3B01G281100.2 | AT4G26100.1 | 21798944 |
| AT5G06710.1 | TraesCS3D01G252000.2 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0447000-00 | Rice | nucleus | 25.66 | 96.67 |
| TraesCS5A01G232700.1 | Wheat | nucleus | 94.4 | 91.17 |
| TraesCS5B01G231300.1 | Wheat | nucleus | 95.28 | 90.99 |
| HORVU5Hr1G067010.2 | Barley | nucleus | 86.43 | 74.55 |
| Zm00001d020670_P001 | Maize | nucleus | 69.91 | 71.17 |
| EER98990 | Sorghum | nucleus | 75.22 | 69.11 |
| GSMUA_Achr3P07740_001 | Banana | nucleus | 39.23 | 68.56 |
| GSMUA_Achr9P15710_001 | Banana | nucleus | 53.98 | 58.65 |
| TraesCS2D01G412900.1 | Wheat | nucleus | 35.4 | 52.17 |
| Zm00001d005875_P001 | Maize | nucleus | 48.67 | 50.77 |
| GSMUA_Achr7P02380_001 | Banana | nucleus | 43.07 | 50.69 |
| KRG95402 | Soybean | nucleus, plastid | 42.77 | 49.66 |
| VIT_08s0007g06670.t01 | Wine grape | nucleus | 48.38 | 49.55 |
| KRH67080 | Soybean | nucleus | 41.3 | 48.61 |
| VIT_13s0156g00260.t01 | Wine grape | nucleus | 49.85 | 47.21 |
| TraesCS4D01G236600.1 | Wheat | nucleus | 37.76 | 46.72 |
| KRH71831 | Soybean | plastid | 44.84 | 46.2 |
| KRH38083 | Soybean | nucleus | 44.25 | 45.87 |
| CDX81016 | Canola | nucleus | 34.51 | 45.0 |
| TraesCS3D01G221800.1 | Wheat | nucleus | 29.2 | 44.59 |
| TraesCS3D01G009700.1 | Wheat | nucleus | 29.5 | 44.25 |
| GSMUA_Achr8P22800_001 | Banana | nucleus | 34.51 | 44.15 |
| KRH43419 | Soybean | nucleus | 48.38 | 43.5 |
| KRH13873 | Soybean | nucleus | 48.67 | 42.97 |
| TraesCS6D01G110400.1 | Wheat | nucleus | 23.89 | 42.19 |
| Solyc01g073910.2.1 | Tomato | nucleus | 44.84 | 41.64 |
| PGSC0003DMT400060951 | Potato | nucleus | 43.07 | 41.6 |
| CDX98948 | Canola | nucleus | 41.59 | 41.59 |
| Bra009219.1-P | Field mustard | nucleus | 41.59 | 41.47 |
| CDX70076 | Canola | nucleus | 41.59 | 41.47 |
| AT5G06710.1 | Thale cress | nucleus | 41.0 | 41.37 |
| PGSC0003DMT400016146 | Potato | nucleus | 45.43 | 41.29 |
| Solyc10g080540.1.1 | Tomato | nucleus | 42.77 | 40.96 |
| TraesCS1D01G220900.1 | Wheat | nucleus | 38.64 | 40.18 |
| TraesCS1D01G379700.1 | Wheat | nucleus | 35.69 | 39.8 |
| TraesCS7D01G417700.1 | Wheat | nucleus | 25.96 | 39.64 |
| Bra005907.1-P | Field mustard | nucleus | 37.46 | 39.44 |
| TraesCS7D01G079000.1 | Wheat | nucleus | 31.27 | 39.41 |
| TraesCS7D01G078900.1 | Wheat | nucleus | 32.15 | 38.93 |
| TraesCS6D01G110600.1 | Wheat | nucleus | 25.37 | 38.22 |
| CDY55775 | Canola | nucleus | 36.28 | 38.2 |
| TraesCS7D01G078800.1 | Wheat | nucleus | 31.86 | 36.36 |
| CDX78884 | Canola | nucleus | 25.66 | 34.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS5D01G235300 |
| EnsemblPlants:TraesCS5D01G235300.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:+:344398948..344400554
Molecular Weight (calculated)
35809.9 Da
IEP (calculated)
6.901
GRAVY (calculated)
-0.536
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGLSLGEA MADAGRELVL GLGVGPGARR EEERRRDQDV DRRGLALGCG SSPEPTMRLA LLPMVPSLGF PWPSESRHLE ASTRGFDVNQ APSSGGSAWG
101: ACAAAEEEQE GTAAAARAAV SSSPNDSGGS FPMDFSAQGE RGASDAAPGG AGGSRGSDED DGGSARKKLR LSKEQAAFLE ESFKEHSTLN PRQKVALAKQ
201: LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLQKELA ELRALKTVHP FYMHLPATTL SMCPSCERVA SNSAPAPAAG APGSGAGIAS
301: PAAPEQNRPS SFAALFSSAR SFPLAAPQPQ PPLPAPSSS
101: ACAAAEEEQE GTAAAARAAV SSSPNDSGGS FPMDFSAQGE RGASDAAPGG AGGSRGSDED DGGSARKKLR LSKEQAAFLE ESFKEHSTLN PRQKVALAKQ
201: LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLQKELA ELRALKTVHP FYMHLPATTL SMCPSCERVA SNSAPAPAAG APGSGAGIAS
301: PAAPEQNRPS SFAALFSSAR SFPLAAPQPQ PPLPAPSSS
001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
Arabidopsis Description
HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.