Factsheet for TraesCS6D01G110600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G149000.1	Wheat	nucleus	93.78	95.91
TraesCS6A01G120600.1	Wheat	nucleus	93.78	93.36
HORVU6Hr1G021870.1	Barley	nucleus, plastid	89.33	81.71
TraesCS6D01G110400.1	Wheat	nucleus	64.44	75.52
GSMUA_Achr7P15910_001	Banana	nucleus	32.89	48.05
GSMUA_Achr10P...	Banana	nucleus	35.56	43.96
Os02t0149900-00	Rice	nucleus	45.33	41.13
EES04526	Sorghum	nucleus	46.67	40.54
TraesCS7D01G417700.1	Wheat	nucleus	40.0	40.54
Zm00001d000303_P001	Maize	nucleus	47.56	39.78
PGSC0003DMT400096970	Potato	nucleus	33.78	38.38
Solyc07g054380.1.1	Tomato	nucleus	33.78	36.72
TraesCS3D01G009700.1	Wheat	nucleus	34.22	34.07
GSMUA_Achr2P04490_001	Banana	nucleus	33.78	33.33
KRH12370	Soybean	nucleus	33.33	33.19
TraesCS2D01G412900.1	Wheat	nucleus	33.78	33.04
KRH19131	Soybean	nucleus	30.67	32.39
GSMUA_Achr7P05000_001	Banana	nucleus	26.67	32.26
GSMUA_Achr1P10390_001	Banana	nucleus	32.89	31.9
KRH37372	Soybean	nucleus	33.33	31.65
KRH02731	Soybean	nucleus	28.44	30.62
TraesCS3D01G221800.1	Wheat	nucleus	28.44	28.83
TraesCS4D01G236600.1	Wheat	nucleus	33.78	27.74
TraesCS7D01G079000.1	Wheat	nucleus	32.89	27.51
TraesCS7D01G078900.1	Wheat	nucleus	32.89	26.43
TraesCS1D01G220900.1	Wheat	nucleus	37.33	25.77
TraesCS5D01G235300.1	Wheat	nucleus	38.22	25.37
TraesCS1D01G379700.1	Wheat	nucleus	33.33	24.67
TraesCS7D01G078800.1	Wheat	nucleus	32.0	24.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF219	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS6D01G110600	EnsemblPlants:TraesCS6D01G110600.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:76064358..76065121

Molecular Weight (calculated)

24761.1 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.704

Length

225 amino acids

Sequence
(BLAST)

001: MSSLTTISSG AMEESQEVEE LVDTRLSLVI GAASRPPPTV LALLPATSPE NEAAARRKRK GQENGAGGVA ATSRQHSKRA KTVHDSSDVD DDDDDGGDAA
101: RSDGTRKKLR LTVEQAALLE ESFRAHNVLS HGEKHDLARQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD DNARLRRELA ETLSSSPAFL
201: SRLTMANDKA VCSSCNKLTS ARMPA

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.