Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G415900.1 | Wheat | nucleus | 96.09 | 97.36 |
| TraesCS2B01G434900.1 | Wheat | nucleus | 95.22 | 95.22 |
| HORVU2Hr1G097940.2 | Barley | nucleus | 90.87 | 92.89 |
| EES12613 | Sorghum | nucleus | 83.48 | 82.4 |
| Zm00001d002754_P001 | Maize | nucleus | 80.0 | 81.06 |
| Os04t0548700-01 | Rice | nucleus | 84.35 | 78.54 |
| KRH77331 | Soybean | nucleus | 54.35 | 46.64 |
| PGSC0003DMT400067540 | Potato | nucleus | 52.61 | 44.0 |
| Solyc08g078300.2.1 | Tomato | nucleus | 53.04 | 43.57 |
| TraesCS1D01G220900.1 | Wheat | nucleus | 60.87 | 42.94 |
| Solyc08g007270.2.1 | Tomato | nucleus | 50.87 | 42.55 |
| KRH28155 | Soybean | nucleus | 52.61 | 42.46 |
| PGSC0003DMT400032546 | Potato | nucleus | 50.87 | 41.79 |
| TraesCS3D01G009700.1 | Wheat | nucleus | 40.87 | 41.59 |
| Bra040094.1-P | Field mustard | nucleus | 50.87 | 41.05 |
| KRH57467 | Soybean | nucleus | 53.04 | 40.94 |
| AT4G16780.1 | Thale cress | nucleus | 50.43 | 40.85 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 52.17 | 40.4 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 48.26 | 40.07 |
| KRH04179 | Soybean | nucleus | 51.74 | 39.8 |
| GSMUA_AchrUn_... | Banana | plastid | 53.91 | 39.74 |
| TraesCS6D01G110400.1 | Wheat | nucleus | 33.04 | 39.58 |
| TraesCS3D01G221800.1 | Wheat | nucleus | 37.83 | 39.19 |
| Solyc06g060830.2.1 | Tomato | nucleus | 50.0 | 38.59 |
| TraesCS4D01G236600.1 | Wheat | nucleus | 45.65 | 38.32 |
| TraesCS7D01G417700.1 | Wheat | nucleus | 36.96 | 38.29 |
| PGSC0003DMT400062081 | Potato | nucleus | 50.0 | 37.7 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 46.52 | 35.43 |
| TraesCS5D01G235300.1 | Wheat | nucleus | 52.17 | 35.4 |
| TraesCS7D01G079000.1 | Wheat | nucleus | 40.87 | 34.94 |
| TraesCS7D01G078900.1 | Wheat | nucleus | 41.3 | 33.93 |
| TraesCS6D01G110600.1 | Wheat | nucleus | 33.04 | 33.78 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 26.52 | 33.7 |
| TraesCS7D01G078800.1 | Wheat | nucleus | 43.04 | 33.33 |
| TraesCS1D01G379700.1 | Wheat | nucleus | 38.26 | 28.95 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF199 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2D01G412900 | EnsemblPlants:TraesCS2D01G412900.1 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr2D:+:527546793..527547829
Molecular Weight (calculated)
25915.8 Da
IEP (calculated)
8.600
GRAVY (calculated)
-0.828
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERAEDLGL SLSLSSSLAP RTHHVAMLLH APERRFLEMP LLPAKRVCEA SADEERSGQR GGGSDDDDGG CGMDGSRKKL RLSKDQSAVL EDSFREHPTL
101: NPRQKAALAQ QLGLRSRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLQKEV QELRALKLVS PHQYMHMSPP TTLTMCPSCE RVSNNNNNNN
201: NNSSNAADRR NGVVEGAICH RPIAVRPQQS
101: NPRQKAALAQ QLGLRSRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLQKEV QELRALKLVS PHQYMHMSPP TTLTMCPSCE RVSNNNNNNN
201: NNSSNAADRR NGVVEGAICH RPIAVRPQQS
001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
Arabidopsis Description
ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.