Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G516300.1 | Wheat | nucleus | 95.27 | 81.98 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 96.62 | 81.95 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 94.93 | 74.93 |
| Zm00001d031725_P001 | Maize | nucleus | 72.3 | 61.14 |
| OQU80770 | Sorghum | nucleus | 73.65 | 60.72 |
| Os08t0544800-01 | Rice | nucleus | 73.99 | 58.71 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 26.69 | 39.11 |
| AT5G51910.1 | Thale cress | nucleus | 30.74 | 31.06 |
| CDY27099 | Canola | nucleus | 28.72 | 30.47 |
| TraesCS6A01G233800.1 | Wheat | plastid | 20.27 | 29.56 |
| CDX91612 | Canola | nucleus | 28.72 | 29.51 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 33.45 | 29.2 |
| CDX95656 | Canola | nucleus | 28.38 | 28.67 |
| Bra022568.1-P | Field mustard | cytosol | 28.72 | 28.62 |
| KRH35393 | Soybean | nucleus | 30.07 | 28.62 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 16.22 | 28.4 |
| TraesCS2A01G376000.1 | Wheat | plastid | 19.59 | 28.29 |
| KRH48289 | Soybean | nucleus | 31.76 | 28.06 |
| KRH65181 | Soybean | nucleus | 31.42 | 27.68 |
| CDY53888 | Canola | nucleus | 29.05 | 27.65 |
| Bra000395.1-P | Field mustard | nucleus | 29.05 | 27.65 |
| KRG91429 | Soybean | nucleus | 30.41 | 27.61 |
| Bra004929.1-P | Field mustard | nucleus | 30.07 | 27.47 |
| CDX74756 | Canola | nucleus | 30.07 | 27.38 |
| PGSC0003DMT400094424 | Potato | cytosol | 22.64 | 27.35 |
| KRH57263 | Soybean | nucleus | 31.76 | 27.17 |
| CDY18910 | Canola | nucleus | 29.73 | 27.08 |
| KRH03994 | Soybean | nucleus | 30.74 | 26.76 |
| PGSC0003DMT400088049 | Potato | cytosol | 23.99 | 26.3 |
| Solyc03g006800.1.1 | Tomato | nucleus | 28.38 | 25.77 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 17.23 | 25.76 |
| AT2G45680.1 | Thale cress | cytosol | 30.07 | 25.0 |
| PGSC0003DMT400062327 | Potato | nucleus | 29.39 | 23.77 |
| Solyc08g080150.1.1 | Tomato | nucleus | 28.38 | 22.7 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 31.42 | 22.63 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 25.34 | 22.19 |
| PGSC0003DMT400058534 | Potato | nucleus | 27.7 | 21.93 |
| TraesCS4A01G222700.1 | Wheat | nucleus, plastid | 26.69 | 20.52 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 22.3 | 19.35 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 25.68 | 18.81 |
| TraesCS5A01G121800.1 | Wheat | nucleus | 25.0 | 17.66 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G355900.1 | EnsemblPlantsGene:TraesCS4A01G355900 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF19 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr4A:-:629486288..629487331
Molecular Weight (calculated)
30880.7 Da
IEP (calculated)
5.276
GRAVY (calculated)
-0.440
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGQDRPP GERDAHAHAG GVVEGRGRRI RMPAACAARI FQLTRELGHK SDGETVRWLL QQSEPAIVAA TGTGTVPAIA TTVDGVLRIP TQSSSSASSA
101: VVDDEASAKR RRKLQPTRAA GPLPTVPPTA AYYSVLADPL LQGGAGGAAI SVASGLAPIG GQQGLVPVFA VPSAAAAAGG NHMIPQATAV WMVPQPAGAP
201: NQPTQYWAFQ SAPQLINLAG AQTMPAGAVF PNVAADYHQQ RQSASTVVQN TNSDHQQFSH HLTGAESHEQ QRRDHHPEED DADDDDEPVS DSSPED
101: VVDDEASAKR RRKLQPTRAA GPLPTVPPTA AYYSVLADPL LQGGAGGAAI SVASGLAPIG GQQGLVPVFA VPSAAAAAGG NHMIPQATAV WMVPQPAGAP
201: NQPTQYWAFQ SAPQLINLAG AQTMPAGAVF PNVAADYHQQ RQSASTVVQN TNSDHQQFSH HLTGAESHEQ QRRDHHPEED DADDDDEPVS DSSPED
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.