Factsheet for TraesCS2B01G095900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6A01G412800.1
TraesCS6B01G289500.1
TraesCS6B01G462100.1
TraesCS6D01G243000.1
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6D01G243000.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G081300.1	Wheat	plastid	90.37	72.19
TraesCS2D01G079100.1	Wheat	plastid	81.85	67.17
Zm00001d029339_P001	Maize	nucleus	62.22	62.22
Os03t0379300-01	Rice	nucleus	57.78	61.9
KXG39270	Sorghum	nucleus	61.85	61.62
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	79.63	54.71
TraesCS2B01G183300.1	Wheat	nucleus	44.44	46.15
GSMUA_AchrUn_...	Banana	nucleus	33.7	42.92
CDY17794	Canola	cytosol	11.48	39.24
TraesCS4B01G125400.1	Wheat	nucleus	36.3	35.9
CDX86900	Canola	cytosol	8.89	35.82
KRH56921	Soybean	nucleus	28.89	35.14
KRH03461	Soybean	nucleus	28.89	34.67
Solyc03g116340.2.1	Tomato	nucleus	26.67	29.88
AT3G47640.1	Thale cress	nucleus	25.93	29.17
PGSC0003DMT400001617	Potato	nucleus	25.93	29.05
VIT_17s0000g06000.t01	Wine grape	nucleus	27.41	28.91
CDY21793	Canola	nucleus	24.81	28.76
Bra019509.1-P	Field mustard	nucleus	24.81	28.63
CDX83022	Canola	nucleus	25.19	28.45
CDX77869	Canola	nucleus	24.44	28.33
CDY53423	Canola	nucleus	23.7	26.89
VIT_14s0108g00480.t01	Wine grape	plastid	31.11	25.61
GSMUA_Achr2P07390_001	Banana	nucleus	19.26	22.81
Bra033788.1-P	Field mustard	nucleus	18.89	11.62

Protein Annotations

EnsemblPlants:TraesCS2B01G095900.1	EnsemblPlantsGene:TraesCS2B01G095900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	MapMan:15.5.32
MapMan:25.4.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:55991402..55993175

Molecular Weight (calculated)

29336.4 Da

IEP (calculated)

5.212

GRAVY (calculated)

-0.642

Length

270 amino acids

Sequence
(BLAST)

001: MVAMLPAARG DAAPATSAGA AEKLVRGPVA DGKCKKKAPR MIHKAEREKH KRDLLNDLFG ELGEMLEADR QTNGKACILT DTTRILRDLL SQLESLRKEN
101: STLQNESHYV TMERNELQDE NDVLRNEILE LQNELATRPA GNPGWGHATA GSPHAASTVF PSHQPMQPST IASAVFPLQQ PLQQTTILEH PYAPPPPPRE
201: LKLFPDTASD IEGLEPSEDP EAANHIARPL ARYPTESASW PVTVSLGLPR TEDEQCSSGT TGSSSASSRD

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.