Factsheet for Bra033788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004407.1-P
Bra007875.1-P
Bra012650.1-P
Bra024392.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	Bra003986.1-P	AT1G69690.1	21798944
AT3G47640.1	Bra004407.1-P	AT1G69690.1	21798944
AT3G47640.1	Bra007875.1-P	AT1G69690.1	21798944
AT3G47640.1	Bra012650.1-P	AT4G17680.1	21798944
AT3G47640.1	Bra028662.1-P	AT5G08330.1	21798944
AT3G47640.1	Bra024392.1-P	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83022	Canola	nucleus	35.99	66.11
CDY53423	Canola	nucleus	29.39	54.2
Bra019509.1-P	Field mustard	nucleus	28.02	52.56
AT3G47640.1	Thale cress	nucleus	23.92	43.75
KRH56921	Soybean	nucleus	14.58	28.83
KRH03461	Soybean	nucleus	14.58	28.44
GSMUA_AchrUn_...	Banana	nucleus	12.53	25.94
Solyc03g116340.2.1	Tomato	nucleus	12.53	22.82
PGSC0003DMT400001617	Potato	nucleus	12.07	21.99
VIT_17s0000g06000.t01	Wine grape	nucleus	12.3	21.09
Os03t0379300-01	Rice	nucleus	11.85	20.63
EER99751	Sorghum	nucleus	12.07	19.92
Zm00001d022225_P001	Maize	nucleus	12.07	19.92
TraesCS2B01G095900.1	Wheat	nucleus	11.62	18.89
TraesCS2B01G183300.1	Wheat	nucleus	11.16	18.85
KXG28874	Sorghum	nucleus	11.85	18.77
TraesCS4A01G163300.1	Wheat	mitochondrion	9.57	18.34
TraesCS2D01G163900.2	Wheat	nucleus	10.71	18.15
Zm00001d029339_P001	Maize	nucleus	10.93	17.78
Os07t0628500-01	Rice	nucleus	10.71	17.74
TraesCS2A01G157800.1	Wheat	nucleus	10.25	17.72
Os11t0601700-01	Rice	nucleus	11.16	17.63
Zm00001d048901_P002	Maize	nucleus	10.71	17.15
TraesCS4B01G125400.1	Wheat	nucleus	10.48	16.85
KXG39270	Sorghum	nucleus	10.02	16.24
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	10.02	16.24
TraesCS2D01G079100.1	Wheat	plastid	11.62	15.5
GSMUA_Achr3P20020_001	Banana	nucleus	10.93	15.0
TraesCS2A01G081300.1	Wheat	plastid	10.93	14.2
GSMUA_Achr2P07390_001	Banana	nucleus	6.61	12.72
Os08t0494375-00	Rice	nucleus	4.78	12.21
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	10.25	11.45

Protein Annotations

EnsemblPlants:Bra033788.1	EnsemblPlants:Bra033788.1-P	EnsemblPlantsGene:Bra033788	ncoils:Coil	PANTHER:PTHR23042	PANTHER:PTHR23042:SF51
UniParc:UPI0002543D5F	UniProt:M4EY96	MapMan:25.4.1.4	:	:	:

Description

AT3G47640 (E=5e-059) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:14235136..14237177

Molecular Weight (calculated)

49792.5 Da

IEP (calculated)

6.128

GRAVY (calculated)

-0.774

Length

439 amino acids

Sequence
(BLAST)

001: MNQQNSGKAS ILCEATKFLK DVFGQIESLR KEQTALLSES NYLTTERNEL KDETSVLETE ISRLHSEIEA RVNQSKPDLN TSPTPEYHHQ QYPQLASQFS
101: GLPIFQGAGF QQSSATPPGA TVILLPMHPD LQTQDTSDLT GHLQTQAPTV MYNSSNVKPR SRQASGDRHR DTRIDRQSQE ETVRCQPPTI KSTNVQNLVE
201: ELLTHLEPES STGKRKMSME STEMITDAQG MDGHIINVSK KEIRKLMERA SRDENSYICL PKHASSFTQT KIVPEMYTKD EINEIWLTTC MEEMRQGIAR
301: IQRANDVSRS ISIDIHRQVS IDSRLHASID NRVPALVNDN PPHSHTMKSQ PDFHTRGEID QLGQEIYRAL ETTEERLGRR CDDIYFPIDL SISALTSKIE
401: VIQGELMEIQ SYIARSHQGR DRSVGTRDLQ SSGNYRREA

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.