Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0687500-01 | |
| Os02t0828566-01 | |
| Os03t0422702-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os02t0828566-01 | AT5G08330.1 | 21798944 |
| AT3G47640.1 | Os03t0422702-00 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0628500-01 | Rice | nucleus | 74.42 | 48.3 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 48.26 | 32.05 |
| EER99751 | Sorghum | nucleus | 49.42 | 31.95 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 47.09 | 31.89 |
| Zm00001d022225_P001 | Maize | nucleus | 48.26 | 31.2 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 48.84 | 31.0 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 45.93 | 30.38 |
| Os03t0379300-01 | Rice | nucleus | 38.37 | 26.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.07 | 23.58 |
| CDY17794 | Canola | cytosol | 10.47 | 22.78 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 29.07 | 19.53 |
| Os11t0601700-01 | Rice | nucleus | 29.65 | 18.35 |
| Solyc03g116340.2.1 | Tomato | nucleus | 24.42 | 17.43 |
| PGSC0003DMT400001617 | Potato | nucleus | 23.84 | 17.01 |
| KRH03461 | Soybean | nucleus | 22.09 | 16.89 |
| CDX77869 | Canola | nucleus | 21.51 | 15.88 |
| KRH56921 | Soybean | nucleus | 20.35 | 15.77 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 29.65 | 15.55 |
| CDY21793 | Canola | nucleus | 20.93 | 15.45 |
| AT3G47640.1 | Thale cress | nucleus | 21.51 | 15.42 |
| Bra019509.1-P | Field mustard | nucleus | 20.93 | 15.38 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 20.35 | 15.35 |
| CDX83022 | Canola | nucleus | 20.93 | 15.06 |
| CDY53423 | Canola | nucleus | 20.35 | 14.71 |
| CDX86900 | Canola | cytosol | 3.49 | 8.96 |
| Bra033788.1-P | Field mustard | nucleus | 12.21 | 4.78 |
Protein Annotations
| EnsemblPlants:Os08t0494375-00 | EnsemblPlantsGene:Os08g0494375 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF62 | ProteinID:BAT06050.1 | SEG:seg |
| UniParc:UPI000393A2C1 | UniProt:A0A0N7KQ27 | MapMan:35.1 | : | : | : |
Description
Conserved hypothetical protein. (Os08t0494375-00)
Coordinates
chr8:-:24404103..24406262
Molecular Weight (calculated)
19366.5 Da
IEP (calculated)
5.605
GRAVY (calculated)
-1.019
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVNKKRDKK VPKRNHKSDR DKLKLDKQND LCTELGNLLC VALERNELHD DNSMLHSEIL ELQNKLRSYD ADGRQSCFES PAFPQQQPVV IEQHYGTTPS
101: ELQLFPESTT SEDSEPSQEH GISDHVTRPQ AKYPTPTATL TVNLFPVLPG RQDQQCSSGT TGTSEEDCTG RS
101: ELQLFPESTT SEDSEPSQEH GISDHVTRPQ AKYPTPTATL TVNLFPVLPG RQDQQCSSGT TGTSEEDCTG RS
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.