Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03461 | Soybean | nucleus | 88.29 | 87.11 |
| CDX86900 | Canola | cytosol | 13.51 | 44.78 |
| CDY17794 | Canola | cytosol | 15.77 | 44.3 |
| PGSC0003DMT400001617 | Potato | nucleus | 47.75 | 43.98 |
| Solyc03g116340.2.1 | Tomato | nucleus | 47.3 | 43.57 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 48.65 | 42.19 |
| AT3G47640.1 | Thale cress | nucleus | 45.5 | 42.08 |
| CDY21793 | Canola | nucleus | 43.69 | 41.63 |
| Bra019509.1-P | Field mustard | nucleus | 43.69 | 41.45 |
| CDX77869 | Canola | nucleus | 43.24 | 41.2 |
| CDX83022 | Canola | nucleus | 44.14 | 41.0 |
| CDY53423 | Canola | nucleus | 40.09 | 37.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.88 | 34.43 |
| Os03t0379300-01 | Rice | nucleus | 36.04 | 31.75 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 35.59 | 31.1 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 34.23 | 29.34 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 34.23 | 29.23 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 35.14 | 28.89 |
| Zm00001d029339_P001 | Maize | nucleus | 34.68 | 28.52 |
| KXG39270 | Sorghum | nucleus | 34.68 | 28.41 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 34.23 | 28.04 |
| Os07t0628500-01 | Rice | nucleus | 33.33 | 27.92 |
| Os11t0601700-01 | Rice | nucleus | 34.68 | 27.7 |
| KXG28874 | Sorghum | nucleus | 33.78 | 27.08 |
| Zm00001d022225_P001 | Maize | nucleus | 32.43 | 27.07 |
| Zm00001d048901_P002 | Maize | nucleus | 32.43 | 26.28 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 37.84 | 26.25 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 31.98 | 26.01 |
| EER99751 | Sorghum | nucleus | 31.08 | 25.94 |
| TraesCS2D01G079100.1 | Wheat | plastid | 35.14 | 23.71 |
| TraesCS2A01G081300.1 | Wheat | plastid | 35.59 | 23.37 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 22.07 | 21.4 |
| Os08t0494375-00 | Rice | nucleus | 15.77 | 20.35 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 35.14 | 19.85 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 20.27 | 19.74 |
| Bra033788.1-P | Field mustard | nucleus | 28.83 | 14.58 |
Protein Annotations
| EntrezGene:100782436 | MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EMBL:ACUP02002802 | EMBL:BT096443 |
| UniProt:C6TFQ3 | ncoils:Coil | EnsemblPlantsGene:GLYMA_05G027600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH56921 | ProteinID:KRH56921 |
| ProteinID:KRH56921.1 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | SUPFAM:SSF47459 | UniParc:UPI0001B16775 |
| InterPro:bHLH_dom | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:2404162..2406884
Molecular Weight (calculated)
24738.4 Da
IEP (calculated)
6.634
GRAVY (calculated)
-0.740
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSESVAPMV ETSKNRSSSG KMNQGKVPRK IHKAEREKMK REHLNERFVD LASALDLNEN NGKASILCET ARLLKDLLSQ IESLKKENVT LLSESHYMTM
101: EKNELKEENC SLETQIEKLQ GEIQARLAQS KPDLNVPPHE PPEQTNFPGQ NLQLHTIEPN LQQGSTVLVV PFHPNLQASF PAPNVTEVTP KSMSVVSKPH
201: ARYPTPADSW PSQLLGEQPT SS
101: EKNELKEENC SLETQIEKLQ GEIQARLAQS KPDLNVPPHE PPEQTNFPGQ NLQLHTIEPN LQQGSTVLVV PFHPNLQASF PAPNVTEVTP KSMSVVSKPH
201: ARYPTPADSW PSQLLGEQPT SS
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.