CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRG92307
KRG99964
KRG99965
KRH01757
KRH03466
KRH04275
KRH08572
KRH15458
KRH28216
KRH31541
KRH34487
KRH36141
KRH39707
KRH46925
KRH54542
KRH56450
KRH56919
KRH57556
KRH63357
KRH64800
KRH70217
KRH76405
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	KRH31541	AT2G31985.1	21798944
AT5G08330.1	KRH03466	AT3G47620.1	21798944
AT5G08330.1	KRH54542	AT3G47620.1	21798944
AT5G08330.1	KRH56919	AT3G47620.1	21798944
AT5G08330.1	KRH63357	AT3G47620.1	21798944
AT5G08330.1	KRH04275	AT4G17680.1	21798944
AT5G08330.1	KRH28216	AT4G17680.1	21798944
AT5G08330.1	KRH57556	AT4G17680.1	21798944
AT5G08330.1	KRH77271	AT4G17680.1	21798944
AT5G08330.1	KRH56450	AT4G36690.1	21798944
AT5G08330.1	KRH64800	AT4G36690.1	21798944
AT5G08330.1	KRH39707	AT5G07840.1	21798944
AT5G08330.1	KRH76405	AT5G07840.1	21798944
AT5G08330.1	KRG90619	AT5G08330.1	21798944
AT5G08330.1	KRH36141	AT5G08330.1	21798944
AT5G08330.1	KRG99964	AT5G38420.1	21798944
AT5G08330.1	KRG99965	AT5G38420.1	21798944
AT5G08330.1	KRH01757	AT5G38420.1	21798944
AT5G08330.1	KRH15458	AT5G38420.1	21798944
AT5G08330.1	KRH46925	AT5G38420.1	21798944
AT5G08330.1	KRG92307	AT5G60340.1	21798944
AT5G08330.1	KRH08572	AT5G60340.1	21798944
AT5G08330.1	KRH34487	AT5G60340.1	21798944
AT5G08330.1	KRH70217	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36141	Soybean	nucleus	88.84	87.4
KRG89108	Soybean	nucleus, plastid	67.77	70.69
KRH40904	Soybean	nucleus	69.42	70.29
KRH40902	Soybean	nucleus	69.42	70.0
CDY44770	Canola	cytosol	58.26	62.67
AT5G08330.1	Thale cress	nucleus	61.57	62.34
Bra028662.1-P	Field mustard	nucleus	58.68	62.01
Os03t0422702-00	Rice	cytosol, plastid	31.41	60.32
Solyc04g009180.1.1	Tomato	nucleus	64.46	58.65
Zm00001d018530_P001	Maize	plastid	49.59	57.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	57.85	57.38
Solyc01g008230.2.1	Tomato	nucleus	57.02	55.42
Os02t0828566-01	Rice	nucleus	52.89	54.24
EES07800	Sorghum	plastid	53.31	53.09
TraesCS6A01G412800.1	Wheat	mitochondrion	42.15	51.52
TraesCS6D01G397000.1	Wheat	mitochondrion	41.32	50.76
TraesCS6B01G462100.1	Wheat	mitochondrion	41.32	50.51
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	53.72	48.69
KRH30615	Soybean	cytosol	23.97	37.18
KRH32533	Soybean	plastid	23.97	30.53
KRH19921	Soybean	plastid	22.73	29.73
PGSC0003DMT400042166	Potato	cytosol	54.96	29.69
KRG99108	Soybean	nucleus	33.06	29.3
KRH45889	Soybean	nucleus	33.06	27.97
KRH49755	Soybean	nucleus	21.9	26.77
KRH35393	Soybean	nucleus	31.41	24.44
KRG91429	Soybean	nucleus	32.23	23.93
KRH65181	Soybean	nucleus	33.06	23.81
KRH48289	Soybean	nucleus	32.64	23.58
KRH06094	Soybean	plastid	34.71	23.27
KRH56919	Soybean	nucleus	39.67	23.08
KRH03466	Soybean	nucleus	39.26	23.0
KRG94577	Soybean	nucleus	30.99	22.73
KRH03994	Soybean	nucleus	31.82	22.65
KRH63357	Soybean	nucleus	36.36	22.11
KRH74835	Soybean	nucleus	34.71	21.82
KRH54542	Soybean	nucleus	36.78	21.81
KRH57263	Soybean	nucleus	30.99	21.68
KRH06910	Soybean	nucleus	30.58	21.45
KRH70699	Soybean	nucleus	36.78	20.99
KRH26343	Soybean	nucleus, plastid	34.71	19.35

Protein Annotations

EntrezGene:100800443	MapMan:15.5.19	MapMan:27.1.5.3	EMBL:ACUP02012627	EnsemblPlantsGene:GLYMA_20G103400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1NF57	InterPro:IPR017887	EnsemblPlants:KRG90619	ProteinID:KRG90619
ProteinID:KRG90619.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI000233F03A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:34616111..34617883

Molecular Weight (calculated)

25770.4 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.479

Length

242 amino acids

Sequence
(BLAST)

001: MSNSDGTTNG AITEAQRQQQ QQGGKALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSVIAATG TGTIPASFSS
101: VSLSSPSSTS DYKPQLLAPT PFILGKRIRT DEDSSKDEAV SVGPSLVGPY APPGPGVVPA WPDFGQIWSF VAAAAAPEMV SVPQQQQQQA SLFAHHHRQQ
201: QQLAIGEALA ARVGNYLPGH LNLLASLSGG PGNSGRRDDE PR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.