Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG91429 | Soybean | nucleus | 87.78 | 83.74 |
| AT5G51910.1 | Thale cress | nucleus | 45.02 | 47.78 |
| CDY27099 | Canola | nucleus | 42.77 | 47.67 |
| CDX91612 | Canola | nucleus | 43.41 | 46.88 |
| Bra022568.1-P | Field mustard | cytosol | 42.77 | 44.78 |
| KRH48289 | Soybean | nucleus | 46.3 | 42.99 |
| KRH65181 | Soybean | nucleus | 45.66 | 42.26 |
| KRH03994 | Soybean | nucleus | 44.69 | 40.88 |
| KRH57263 | Soybean | nucleus | 43.73 | 39.31 |
| Solyc03g006800.1.1 | Tomato | nucleus | 39.87 | 38.04 |
| PGSC0003DMT400062327 | Potato | nucleus | 44.05 | 37.43 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 23.47 | 36.14 |
| KRH32533 | Soybean | plastid | 21.22 | 34.74 |
| KRH19921 | Soybean | plastid | 20.26 | 34.05 |
| KRH30615 | Soybean | cytosol | 17.04 | 33.97 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 34.41 | 33.65 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 20.26 | 33.33 |
| KRG90619 | Soybean | nucleus | 24.44 | 31.41 |
| KRH36141 | Soybean | nucleus | 24.76 | 31.3 |
| KRG89108 | Soybean | nucleus, plastid | 23.15 | 31.03 |
| GSMUA_Achr11P... | Banana | nucleus | 22.51 | 30.97 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 21.86 | 30.91 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 28.62 | 30.07 |
| KRH40904 | Soybean | nucleus | 22.83 | 29.71 |
| KRG99108 | Soybean | nucleus | 26.05 | 29.67 |
| KRH40902 | Soybean | nucleus | 22.83 | 29.58 |
| KRH45889 | Soybean | nucleus | 27.01 | 29.37 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 32.15 | 29.15 |
| Zm00001d031725_P001 | Maize | nucleus | 32.48 | 28.86 |
| OQU80770 | Sorghum | nucleus | 32.8 | 28.41 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 30.55 | 27.62 |
| Os08t0544800-01 | Rice | nucleus | 33.12 | 27.61 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 30.87 | 27.51 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 31.19 | 25.87 |
| KRH49755 | Soybean | nucleus | 16.08 | 25.25 |
| KRG94577 | Soybean | nucleus | 26.37 | 24.85 |
| KRH06910 | Soybean | nucleus | 26.37 | 23.77 |
| EER99208 | Sorghum | nucleus | 24.44 | 23.31 |
| KRH06094 | Soybean | plastid | 26.69 | 22.99 |
| KRH74835 | Soybean | nucleus | 28.3 | 22.86 |
| KRH56919 | Soybean | nucleus | 29.9 | 22.36 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 19.61 | 22.34 |
| KRH03466 | Soybean | nucleus | 29.58 | 22.28 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 24.12 | 22.19 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 23.79 | 22.16 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 23.79 | 21.83 |
| KRH70699 | Soybean | nucleus | 29.58 | 21.7 |
| Zm00001d006165_P001 | Maize | nucleus | 22.51 | 21.21 |
| KRH63357 | Soybean | nucleus | 26.69 | 20.85 |
| KRH54542 | Soybean | nucleus | 27.01 | 20.59 |
| Os09t0521300-00 | Rice | nucleus | 24.44 | 19.95 |
| KRH26343 | Soybean | nucleus, plastid | 27.65 | 19.82 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A0R0HY55 | EMBL:ACUP02006672 | EnsemblPlantsGene:GLYMA_10G240200 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | EnsemblPlants:KRH35393 | ProteinID:KRH35393 | ProteinID:KRH35393.1 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF32 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000233CAAF |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:46871673..46872747
Molecular Weight (calculated)
32964.7 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.390
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNPTHDGG DDTSETPLPP MVDPSPSPSP QMKEEVMDAE QGGDVSLPMS VVPASLTVST EAAAKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG
101: HKSDGETIRW LLEHAEPAII EATGTGTIPA IAVSVGGTLK IPTSSEARAQ GEEDTPKKRR RRALKSEFIN LNENQVSVSS GLAPIAQSSA YGSGGGGLVP
201: LWHGNGAAAG PFFVFPNASN PPQYWAIPAT AAPFFNVQAR PISGFVSALQ MQHDNHHHSL INAAASGSVK SSSTVSVTSS AASTQMLKDF SFEIYDKKEL
301: QFLGQPPQPS S
101: HKSDGETIRW LLEHAEPAII EATGTGTIPA IAVSVGGTLK IPTSSEARAQ GEEDTPKKRR RRALKSEFIN LNENQVSVSS GLAPIAQSSA YGSGGGGLVP
201: LWHGNGAAAG PFFVFPNASN PPQYWAIPAT AAPFFNVQAR PISGFVSALQ MQHDNHHHSL INAAASGSVK SSSTVSVTSS AASTQMLKDF SFEIYDKKEL
301: QFLGQPPQPS S
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Arabidopsis Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.