CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH04597
KRH28456
KRH54046
KRH54542
KRH56919
KRH57934
KRH63322
KRH63357
KRH63904
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	KRH04597	AT2G23420.1	21798944
AT5G16320.1	KRH28456	AT2G23420.1	21798944
AT5G16320.1	KRH57934	AT2G23420.1	21798944
AT5G16320.1	KRH63322	AT2G23420.1	21798944
AT5G16320.1	KRH77015	AT2G23420.1	21798944
AT5G16320.1	KRH03466	AT3G47620.1	21798944
AT5G16320.1	KRH54542	AT3G47620.1	21798944
AT5G16320.1	KRH56919	AT3G47620.1	21798944
AT5G16320.1	KRH63357	AT3G47620.1	21798944
AT5G16320.1	KRH54046	AT4G00650.1	19429606
AT5G16320.1	KRH63904	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46301	Soybean	cytosol	89.25	89.74
KRH73863	Soybean	nucleus	48.82	51.64
CDY67200	Canola	cytosol, nucleus	9.11	35.71
Bra008624.1-P	Field mustard	cytosol	29.33	35.7
CDX69452	Canola	cytosol	28.78	35.03
CDY55572	Canola	nucleus	22.4	34.36
CDY12290	Canola	cytosol	27.14	33.48
CDY67951	Canola	cytosol	27.69	32.97
GSMUA_Achr9P09220_001	Banana	nucleus	23.5	32.58
Bra023207.1-P	Field mustard	cytosol	27.32	32.54
VIT_19s0090g01700.t01	Wine grape	cytosol	22.59	32.21
AT1G31814.1	Thale cress	cytosol	26.41	30.66
GSMUA_Achr6P24860_001	Banana	nucleus	26.96	30.52
AT5G16320.1	Thale cress	nucleus	26.05	30.43
KRH66282	Soybean	cytosol	25.5	25.64
KRH07289	Soybean	cytosol	25.5	25.64
KRH66280	Soybean	cytosol	24.95	25.18
KRH35520	Soybean	cytosol	21.49	22.26
KRG91301	Soybean	cytosol	21.13	22.14
KRH04492	Soybean	nucleus	22.22	22.06
Os03t0193225-01	Rice	plasma membrane	20.58	21.98
KRH58029	Soybean	nucleus	21.86	21.7
HORVU4Hr1G071420.1	Barley	cytosol, plastid	18.76	20.72
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	18.76	20.68
TraesCS4D01G265900.1	Wheat	nucleus	18.58	20.48
EER92706	Sorghum	plastid	18.94	20.27
Zm00001d028173_P002	Maize	plastid	18.76	20.12
KRH41582	Soybean	nucleus	18.94	20.0
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	18.4	19.73
KRH60292	Soybean	nucleus	18.03	19.04
KRH54046	Soybean	nucleus	15.85	14.7
KRH63904	Soybean	nucleus	15.85	14.48
PGSC0003DMT400036725	Potato	nucleus	3.64	7.35

Protein Annotations

EMBL:ACUP02010899	EnsemblPlants:KRG98570	EnsemblPlantsGene:GLYMA_18G081400	EntrezGene:102669439	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF13	PFAM:PF07899	ProteinID:KRG98570	ProteinID:KRG98570.1
SEG:seg	UniParc:UPI0006ED726A	UniProt:A0A0R0F8D9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr18:-:7855818..7859980

Molecular Weight (calculated)

60509.8 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.483

Length

549 amino acids

Sequence
(BLAST)

001: MATLKTISAA LNLVDSKKEN LKKAFDDLQS LFSPLPLSWS DLDSHFTTVH HSLTHRFHLL QSQSETLTLT PNSDPPPQTP QNANFSSNPT DPSSNHDESS
101: PGVSPQNDAV KGSVTPRNEL VAFCEKMDGV GLMNYVNDNF QDRARIQAEL PGAFRHAPDA GAMVLGALER FHGEGSGNEL KEWELRRIRK TCIVMLKQFR
201: VAALSVSAEA SVRARKLALA WKERLVGDDD NMFGALGLLH LVCAFGFVSE FSLDELVGFS VAAPTNEEDF PELCRAVGLT ERVPDIVQKL IDKDKHILAV
301: KYILEFNLAD RISPVPILKA CVDEAKKLGK RLFQEGKSLV FLQNESMSRE INTLRSVIKT IESYKLESEY PLASLEQHIE QLKRQKTNNK RAAPAPAAKP
401: PQHQQQQQQQ KRNMQNQQQQ TGIKRPRASA PVGPAAVLKN VNSTIHHYQQ SLAHQSGLFP EHPNPYMSSP AMPFGMVAPT PNVPPYAGPS AGPYGHDGVP
501: MGPSGNPNLG GSHLSLSEPH VQTGGYYDRA STYGGIGLQH YYQASYYPQ

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.