CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH04597
KRH28456
KRH54046
KRH54542
KRH56919
KRH57934
KRH63322
KRH63357
KRH63904
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	KRH04597	AT2G23420.1	21798944
AT5G16320.1	KRH28456	AT2G23420.1	21798944
AT5G16320.1	KRH57934	AT2G23420.1	21798944
AT5G16320.1	KRH63322	AT2G23420.1	21798944
AT5G16320.1	KRH77015	AT2G23420.1	21798944
AT5G16320.1	KRH03466	AT3G47620.1	21798944
AT5G16320.1	KRH54542	AT3G47620.1	21798944
AT5G16320.1	KRH56919	AT3G47620.1	21798944
AT5G16320.1	KRH63357	AT3G47620.1	21798944
AT5G16320.1	KRH54046	AT4G00650.1	19429606
AT5G16320.1	KRH63904	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98570	Soybean	cytosol, nucleus, plastid	51.64	48.82
KRH46301	Soybean	cytosol	50.1	47.62
CDY67951	Canola	cytosol	29.29	32.97
CDY55572	Canola	nucleus	22.74	32.96
CDY12290	Canola	cytosol	28.13	32.81
Bra023207.1-P	Field mustard	cytosol	28.71	32.32
CDY67200	Canola	cytosol, nucleus	8.67	32.14
CDX69452	Canola	cytosol	27.75	31.93
Bra008624.1-P	Field mustard	cytosol	27.55	31.71
VIT_19s0090g01700.t01	Wine grape	cytosol	23.51	31.69
GSMUA_Achr6P24860_001	Banana	nucleus	29.09	31.13
AT5G16320.1	Thale cress	nucleus	28.13	31.06
GSMUA_Achr9P09220_001	Banana	nucleus	23.7	31.06
AT1G31814.1	Thale cress	cytosol	26.2	28.75
KRH66280	Soybean	cytosol	26.78	25.55
KRH66282	Soybean	cytosol	26.59	25.27
KRH07289	Soybean	cytosol	26.59	25.27
Os03t0193225-01	Rice	plasma membrane	21.97	22.18
HORVU4Hr1G071420.1	Barley	cytosol, plastid	21.19	22.13
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	21.0	21.89
TraesCS4D01G265900.1	Wheat	nucleus	20.62	21.49
EER92706	Sorghum	plastid	21.0	21.25
KRG91301	Soybean	cytosol	21.0	20.8
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	20.42	20.7
KRH58029	Soybean	nucleus	21.97	20.61
KRH35520	Soybean	cytosol	21.0	20.57
Zm00001d028173_P002	Maize	plastid	20.23	20.51
KRH04492	Soybean	nucleus	21.58	20.25
KRH41582	Soybean	nucleus	19.65	19.62
KRH60292	Soybean	nucleus	19.08	19.04
KRH63904	Soybean	nucleus	15.99	13.81
KRH54046	Soybean	nucleus	15.61	13.68
PGSC0003DMT400036725	Potato	nucleus	4.62	8.82

Protein Annotations

EMBL:ACUP02001288	EnsemblPlants:KRH73863	EnsemblPlantsGene:GLYMA_02G297300	EntrezGene:100808558	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
PANTHER:PTHR31791	PANTHER:PTHR31791:SF13	PFAM:PF07899	ProteinID:KRH73863	ProteinID:KRH73863.1	SEG:seg
UniParc:UPI0002337012	UniProt:I1JJG6	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47492757..47495282

Molecular Weight (calculated)

56801.6 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.386

Length

519 amino acids

Sequence
(BLAST)

001: METSKTISAA LKLFDAKKEN LKKAYYDLQS HSSLLAPSFS LSWSHLDAHF TSLHTSLSHR FHLLQSLESQ QQYPPSSPSK YLSFPPSPTD PSSQNGTALP
101: KNPSEQILTL CNNMDGKGLR DYVGDHLKDK AAIEDTLRSA LKSASDAAAS MLLDSLDGVV GANVVKDDKE LRKRKRTCSF LFKQLRAAAS VSLSFKEKLR
201: ANRLCVDWKR SLMRDGCVDG VGAMAFLHFV AAYGLLSELT VHEILTFSVI AASNDELAEL YWSAGLTDKA PGLVQKLIDR SKHILAVKFV FEFNLAHKIP
301: PVPILEAHVN ESQKLVKRLS EEGKSLSEIT AREIHALKSA IKVIESHNLQ SEYPPESLQQ RIEQLMKHKA NVKYAASAFS AKPPPHQQQQ SGIKRPRMSE
401: PVGSASVLNS ASGASSTVHY QQPHFQSSGL LLEHLNPYMN LPTMPYGMKA QTPSIPPYTG ASTGPYGPDG VPMGPSGNRG QGGSLPISSE PLMPSGYYDS
501: GSAYGGYGLQ HYYQTSYPQ

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.