CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH04597
KRH28456
KRH54046
KRH54542
KRH56919
KRH57934
KRH63322
KRH63357
KRH63904
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	KRH04597	AT2G23420.1	21798944
AT5G16320.1	KRH28456	AT2G23420.1	21798944
AT5G16320.1	KRH57934	AT2G23420.1	21798944
AT5G16320.1	KRH63322	AT2G23420.1	21798944
AT5G16320.1	KRH77015	AT2G23420.1	21798944
AT5G16320.1	KRH03466	AT3G47620.1	21798944
AT5G16320.1	KRH54542	AT3G47620.1	21798944
AT5G16320.1	KRH56919	AT3G47620.1	21798944
AT5G16320.1	KRH63357	AT3G47620.1	21798944
AT5G16320.1	KRH54046	AT4G00650.1	19429606
AT5G16320.1	KRH63904	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98570	Soybean	cytosol, nucleus, plastid	89.74	89.25
KRH73863	Soybean	nucleus	47.62	50.1
CDY67200	Canola	cytosol, nucleus	9.16	35.71
Bra008624.1-P	Field mustard	cytosol	29.49	35.7
CDX69452	Canola	cytosol	28.94	35.03
CDY55572	Canola	nucleus	21.79	33.24
GSMUA_Achr9P09220_001	Banana	nucleus	23.81	32.83
CDY12290	Canola	cytosol	26.56	32.58
CDY67951	Canola	cytosol	27.11	32.1
Bra023207.1-P	Field mustard	cytosol	26.74	31.67
VIT_19s0090g01700.t01	Wine grape	cytosol	22.16	31.43
AT5G16320.1	Thale cress	nucleus	26.19	30.43
AT1G31814.1	Thale cress	cytosol	26.19	30.23
GSMUA_Achr6P24860_001	Banana	nucleus	26.74	30.1
KRH07289	Soybean	cytosol	25.82	25.82
KRH66282	Soybean	cytosol	25.82	25.82
KRH66280	Soybean	cytosol	25.09	25.18
KRH35520	Soybean	cytosol	21.79	22.45
KRG91301	Soybean	cytosol	21.43	22.33
KRH04492	Soybean	nucleus	22.34	22.06
KRH58029	Soybean	nucleus	22.16	21.88
Os03t0193225-01	Rice	plasma membrane	20.33	21.6
HORVU4Hr1G071420.1	Barley	cytosol, plastid	18.5	20.32
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	18.32	20.08
TraesCS4D01G265900.1	Wheat	nucleus	18.32	20.08
KRH41582	Soybean	nucleus	18.86	19.81
EER92706	Sorghum	plastid	18.5	19.69
Zm00001d028173_P002	Maize	plastid	18.32	19.53
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	17.77	18.95
KRH60292	Soybean	nucleus	17.95	18.85
KRH63904	Soybean	nucleus	15.38	13.98
KRH54046	Soybean	nucleus	15.02	13.85
PGSC0003DMT400036725	Potato	nucleus	4.03	8.09

Protein Annotations

EMBL:ACUP02005338	EnsemblPlants:KRH46301	EnsemblPlantsGene:GLYMA_08G325700	EntrezGene:100818664	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF13	PFAM:PF07899	ProteinID:KRH46301	ProteinID:KRH46301.1
SEG:seg	UniParc:UPI0002338DDB	UniProt:K7LAA1	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:44378779..44382000

Molecular Weight (calculated)

60423.8 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.461

Length

546 amino acids

Sequence
(BLAST)

001: MATLKTISAA LNLVDSKKEN LKKAFDNLHS LLSPLPLSWL DLDSHFTTLH HSLTHRFNLL QSHSQTLTPI PDPPPHTPQD VNFSSNPTDP SSNHDESSPG
101: VSLQNDVVPG PVTPRNELVA LCEKMDGVGL MNYVNDNFQD RTRVQAELPG AFRHAPDAGT MVLGALEVFH GEGSELKEWE LRRIRKACIV LLKQFRVAAL
201: SVSAEASVRA RELALEWKER LVGDEDNMFG ALGLLHLICA FGFVSEFSLD ELVDFSVAAP TNEEDFPELC RTIGLTERVP DIVQKLIDKD KHIPAVKYIL
301: EFNLADRISP VPILKACVEE AKKLGKRLFQ EGKSLNESTS REINTLRMVI KTIESYKLES EYPLASLEQH IEQLKRQKTN NKHAAPTSAA KPPQHKQQQQ
401: QQQQKRNMQK QPQQTGIKRP RASAPVGSAA VLKNVNNVNS TIHHYQQHLV HPSGLFTEHP NPYMSLPAMP FGMVSPTPNV PPYAGPSAGP YGHDGVPMGP
501: SGNPSLGGSH LSSSEPHVQA VGYYDRASTY GGIGLQHYYQ ASYYPQ

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.