CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91301
KRH06147
KRH07289
KRH10215
KRH13261
KRH14867
KRH23112
KRH23771
KRH35520
KRH40033
KRH47571
KRH51553
KRH60871
KRH62942
KRH66280
KRH66282
KRH73214
KRH75298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	KRH51553	AT1G20880.1	21798944
AT3G22440.1	KRH60871	AT1G20880.1	21798944
AT3G22440.1	KRH13261	AT1G33470.1	21798944
AT3G22440.1	KRH23771	AT1G33470.1	21798944
AT3G22440.1	KRH40033	AT1G33470.1	21798944
AT3G22440.1	KRH62942	AT1G33470.1	21798944
AT3G22440.1	KRH75298	AT1G33470.1	21798944
AT3G22440.1	KRH14867	AT2G04400.1	15714319
AT3G22440.1	KRH73214	AT2G04400.1	15714319
AT3G22440.1	KRG91301	AT4G14900.1	21798944
AT3G22440.1	KRH35520	AT4G14900.1	21798944
AT4G14900.1	KRH06147	AT3G13990.1	21798944
AT4G14900.1	KRH47571	AT3G13990.1	21798944
AT4G14900.1	KRH07289	AT5G48385.1	21798944
AT4G14900.1	KRH66280	AT5G48385.1	21798944
AT4G14900.1	KRH66282	AT5G48385.1	21798944
AT4G14900.1	KRH10215	AT5G59210.1	21798944
AT4G14900.1	KRH23112	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35520	Soybean	cytosol	96.76	95.66
VIT_05s0020g03470.t01	Wine grape	nucleus	76.34	76.63
PGSC0003DMT400077344	Potato	nucleus	70.04	71.4
Solyc09g076050.2.1	Tomato	nucleus	69.47	70.82
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	68.89	67.86
CDY46317	Canola	cytosol, nucleus, plastid	67.94	67.81
CDY34252	Canola	cytosol, nucleus, plastid	66.79	67.05
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	67.94	66.67
AT4G14900.1	Thale cress	nucleus	66.79	65.79
GSMUA_Achr2P12700_001	Banana	nucleus	56.68	60.74
GSMUA_AchrUn_...	Banana	cytosol, nucleus	26.72	59.83
GSMUA_Achr7P01520_001	Banana	nucleus	54.39	58.4
GSMUA_Achr4P28440_001	Banana	cytosol	31.11	53.09
CDY38318	Canola	nucleus	51.34	50.66
Os07t0173200-02	Rice	cytosol	50.0	49.06
Os03t0794900-01	Rice	nucleus	47.9	45.64
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	48.66	44.12
Zm00001d018911_P001	Maize	cytosol	49.05	42.34
HORVU5Hr1G104870.1	Barley	cytosol	44.66	42.16
TraesCS5A01G434500.1	Wheat	cytosol	44.47	42.06
TraesCS5D01G442300.1	Wheat	cytosol	43.89	41.67
TraesCS5B01G437500.2	Wheat	cytosol	44.08	41.62
KXG34492	Sorghum	nucleus	49.05	41.59
KRH41582	Soybean	nucleus	33.97	34.23
KRH60292	Soybean	nucleus	33.59	33.85
KRH66282	Soybean	cytosol	28.82	27.66
KRH07289	Soybean	cytosol	28.63	27.47
KRH66280	Soybean	cytosol	28.24	27.21
HORVU3Hr1G033190.1	Barley	nucleus	5.34	26.42
KRH04492	Soybean	nucleus	27.86	26.4
KRH58029	Soybean	nucleus	27.29	25.86
KRH46301	Soybean	cytosol	22.33	21.43
KRG98570	Soybean	cytosol, nucleus, plastid	22.14	21.13
KRH73863	Soybean	nucleus	20.8	21.0
KRH54046	Soybean	nucleus	19.08	16.89
KRH63904	Soybean	nucleus	18.89	16.47

Protein Annotations

EMBL:ACUP02012674	EnsemblPlants:KRG91301	EnsemblPlantsGene:GLYMA_20G146100	EntrezGene:100805780	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
PANTHER:PTHR31791	PANTHER:PTHR31791:SF2	PFAM:PF07899	ProteinID:KRG91301	ProteinID:KRG91301.1	SEG:seg
UniParc:UPI000233DDB8	UniProt:I1NGF2	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:38454612..38457622

Molecular Weight (calculated)

57632.9 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.328

Length

524 amino acids

Sequence
(BLAST)

001: MGSIPDPGEL SELTQPSFDE FQRQTSLMTS CTLLWKELSD HFSSLEQDLN HKSEALKRKI HTLDNSTSDS LRLLDHRETS LDATLQIALR TLDTRRTAAL
101: SALLHDADDT SPDGEVDDTA GLVLKLKSFC LRMDAFGFFA FVSAKKKELD GLRAEMPVAL AECVDPAKFV LEAISEVFPV DKRGEKAGHD LGWACVLVLE
201: SLIPVVVDPV IGKSRLLVTP TVKEHATEIA ETWKSSLEDR GGVENLKTPD VHTFLQHVVT FGIVKNDDSD LYRKLVIASA WRKQMPKLAL SLGLAQQMPD
301: MIEELISKGQ QLDAVHFTYE VGLVEKFPPV PLLKSFLKDA KKVAASILED PNNAGRAAYL AARKEQSALR AVIKCIEEYK LEDEFPPENL KKRLDQLEKV
401: KTEKRKPVAV PANKRTRASN GNGGPMPPAK AGRLTNAYVS SFPAAPTFVR SPSHGQYPAA LPPYPSPPHM YGSRSPPANP YAAYSPEPAP AIAGSYPAAP
501: MNYPHAYGGY GNVLAPTYQQ AYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.