Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10215 | Soybean | cytosol | 93.3 | 93.3 |
| AT5G59210.1 | Thale cress | nucleus | 64.67 | 64.52 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 64.9 | 62.86 |
| CDY22263 | Canola | cytosol | 14.32 | 62.63 |
| Solyc09g055760.2.1 | Tomato | nucleus | 60.51 | 59.41 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 54.97 | 54.21 |
| CDY02864 | Canola | extracellular, golgi, vacuole | 40.18 | 53.21 |
| EER92496 | Sorghum | nucleus | 51.73 | 50.79 |
| Os03t0268100-01 | Rice | nucleus | 51.96 | 50.56 |
| TraesCS4A01G093700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.81 | 49.77 |
| TraesCS4D01G211400.1 | Wheat | cytosol | 50.81 | 49.77 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 49.88 | 49.32 |
| Zm00001d047834_P004 | Maize | cytosol | 50.58 | 46.4 |
| HORVU4Hr1G060500.11 | Barley | cytosol, nucleus | 46.65 | 40.73 |
| Zm00001d028569_P002 | Maize | cytosol | 51.73 | 38.55 |
Protein Annotations
| EMBL:ACUP02008457 | EnsemblPlants:KRH23112 | EnsemblPlantsGene:GLYMA_13G339200 | EntrezGene:100795899 | ncoils:Coil | PANTHER:PTHR45393 |
| ProteinID:KRH23112 | ProteinID:KRH23112.1 | SEG:seg | UniParc:UPI000233AF69 | UniProt:I1M4Z3 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr13:-:43138357..43143906
Molecular Weight (calculated)
49217.4 Da
IEP (calculated)
5.350
GRAVY (calculated)
-0.783
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARHATLGR RTLEEIRQKR AAERLSKTSS GPDLGQVPST SETSGMSKSE SANRLSETDL SALLSQLKGL QKKNTELEEE NRKITLKLQT MEIDNEAMHK
101: QLNDLEQNTV PSLRKALRDV AMEKDAAVVA REDLSAQLRM LKKRLKEAED EQYRAEEHAA ALRAELNSIQ QQAMNNTVST ISSFGNPPDH FQIQRLQKEL
201: GDLKLELQRE SLLRHQEQEQ LAKEQTHITS LISEKQELEE KLMLMSREAA EVSDKASHKA FSLEDKQKLD RQLHDMALAI ERLESSRQKL LMEIDSQSTE
301: IERLFEENSN LSNSYQEAVG AAARWENQVM ECLKQNEELR GILDNLRMEQ ARGLPDSSKN GEHEIASLAS MKGQLVSEQS RAEVLSAEVM QLSAQLEQVK
401: QAYDGLARFY RPVLRNIESN LIKMKQDSSL AVR
101: QLNDLEQNTV PSLRKALRDV AMEKDAAVVA REDLSAQLRM LKKRLKEAED EQYRAEEHAA ALRAELNSIQ QQAMNNTVST ISSFGNPPDH FQIQRLQKEL
201: GDLKLELQRE SLLRHQEQEQ LAKEQTHITS LISEKQELEE KLMLMSREAA EVSDKASHKA FSLEDKQKLD RQLHDMALAI ERLESSRQKL LMEIDSQSTE
301: IERLFEENSN LSNSYQEAVG AAARWENQVM ECLKQNEELR GILDNLRMEQ ARGLPDSSKN GEHEIASLAS MKGQLVSEQS RAEVLSAEVM QLSAQLEQVK
401: QAYDGLARFY RPVLRNIESN LIKMKQDSSL AVR
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
Arabidopsis Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.