Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22263 | Canola | cytosol | 17.74 | 77.78 |
| CDY02864 | Canola | extracellular, golgi, vacuole | 55.53 | 73.7 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 67.28 | 65.32 |
| KRH23112 | Soybean | nucleus | 64.52 | 64.67 |
| KRH10215 | Soybean | cytosol | 63.82 | 63.97 |
| Solyc09g055760.2.1 | Tomato | nucleus | 61.06 | 60.09 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 55.3 | 54.67 |
| Os03t0268100-01 | Rice | nucleus | 53.69 | 52.36 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 52.77 | 52.28 |
| TraesCS4A01G093700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.23 | 52.26 |
| TraesCS4D01G211400.1 | Wheat | cytosol | 53.0 | 52.04 |
| EER92496 | Sorghum | nucleus | 52.53 | 51.7 |
| Zm00001d047834_P004 | Maize | cytosol | 51.38 | 47.25 |
| HORVU4Hr1G060500.11 | Barley | cytosol, nucleus | 49.54 | 43.35 |
| Zm00001d028569_P002 | Maize | cytosol | 52.3 | 39.07 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836039 | UniProt:A0A178UGE6 | ProteinID:AED97157.1 | ProteinID:AED97158.1 | ArrayExpress:AT5G59210 |
| EnsemblPlantsGene:AT5G59210 | RefSeq:AT5G59210 | TAIR:AT5G59210 | RefSeq:AT5G59210-TAIR-G | EnsemblPlants:AT5G59210.1 | TAIR:AT5G59210.1 |
| EMBL:AY079030 | EMBL:AY113009 | Unigene:At.28110 | ncoils:Coil | GO:GO:0008150 | RefSeq:NP_200729.3 |
| RefSeq:NP_851219.1 | ProteinID:OAO92202.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR45393 |
| UniProt:Q8RY08 | UniParc:UPI00000A9A75 | SEG:seg | : | : | : |
Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
Coordinates
chr5:-:23890546..23893769
Molecular Weight (calculated)
48905.7 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.755
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.