Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22263 | Canola | cytosol | 21.41 | 70.71 |
| AT5G59210.1 | Thale cress | nucleus | 73.7 | 55.53 |
| KRH23112 | Soybean | nucleus | 53.21 | 40.18 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 54.74 | 40.04 |
| KRH10215 | Soybean | cytosol | 51.68 | 39.03 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 52.29 | 38.95 |
| Solyc09g055760.2.1 | Tomato | nucleus | 52.29 | 38.78 |
| Os03t0268100-01 | Rice | nucleus | 51.68 | 37.98 |
| TraesCS4A01G093700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 51.07 | 37.78 |
| TraesCS4D01G211400.1 | Wheat | cytosol | 50.76 | 37.56 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 49.85 | 37.21 |
| EER92496 | Sorghum | nucleus | 48.93 | 36.28 |
| HORVU4Hr1G060500.11 | Barley | cytosol, nucleus | 49.54 | 32.66 |
| Zm00001d047834_P004 | Maize | cytosol | 46.79 | 32.42 |
| Zm00001d028569_P002 | Maize | cytosol | 48.93 | 27.54 |
Protein Annotations
| EnsemblPlants:CDY02864 | EnsemblPlantsGene:GSBRNA2T00115077001 | GO:A0A078EQB9 | ncoils:Coil | PANTHER:PTHR45393 | PFscan:PS51257 |
| ProteinID:CDY02864 | ProteinID:CDY02864.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDD7AD | MapMan:35.2 |
Description
BnaC02g10250D
Coordinates
chrLK031937:+:973446..975209
Molecular Weight (calculated)
37168.3 Da
IEP (calculated)
4.510
GRAVY (calculated)
-0.377
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLVISVSII RCYTFVLLVL INIIALLSCN KPYFFFCFKG EFKPALGGEE SEIQIILVRL QSKESENGSL ECRLNVLEQN TVPSLRKALK EIAMEKDAAV
101: VSREDLSAQA EEEQYRAEED AASLRAELNS TQQQTMGSSF VPSSPDQVLE KEMANLKLEL QKESMLRQQE QQRLAEEQTR VASLMSENQE LVLKISVLSS
201: GASEVSESSQ KVFSVEDKEV LEKQLHDMAV ALERLESSRQ KLLMEIDNQS YEIEKLFEEN SNLSASYQES INISKQWESQ VKECLKQNVE LREALDKLRT
301: ESLSAQVLQL STQLQQTTQA FNGHMRV
101: VSREDLSAQA EEEQYRAEED AASLRAELNS TQQQTMGSSF VPSSPDQVLE KEMANLKLEL QKESMLRQQE QQRLAEEQTR VASLMSENQE LVLKISVLSS
201: GASEVSESSQ KVFSVEDKEV LEKQLHDMAV ALERLESSRQ KLLMEIDNQS YEIEKLFEEN SNLSASYQES INISKQWESQ VKECLKQNVE LREALDKLRT
301: ESLSAQVLQL STQLQQTTQA FNGHMRV
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
Arabidopsis Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.