Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003872.1-P | Field mustard | cytosol | 67.91 | 90.1 |
| CDX72930 | Canola | nucleus | 64.18 | 76.79 |
| AT1G72630.1 | Thale cress | nucleus | 67.16 | 75.63 |
| CDX96422 | Canola | nucleus | 62.69 | 75.0 |
| CDX81827 | Canola | nucleus | 53.73 | 64.29 |
| CDY21748 | Canola | nucleus | 53.73 | 64.29 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 53.73 | 63.16 |
| KRH06171 | Soybean | nucleus | 50.0 | 58.77 |
| KRH47584 | Soybean | nucleus | 50.0 | 58.77 |
| Os11t0621500-01 | Rice | nucleus | 50.0 | 57.27 |
| GSMUA_Achr8P01310_001 | Banana | nucleus | 45.52 | 55.45 |
| EES08878 | Sorghum | cytosol | 46.27 | 50.82 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 40.3 | 48.65 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 48.51 | 48.51 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 48.51 | 48.51 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 48.51 | 47.79 |
| Zm00001d048801_P001 | Maize | cytosol | 44.03 | 45.74 |
| CDY61710 | Canola | nucleus | 25.37 | 30.36 |
| CDY20512 | Canola | nucleus | 25.37 | 30.09 |
| CDY60339 | Canola | nucleus | 25.37 | 29.82 |
| CDY07627 | Canola | nucleus | 25.37 | 29.82 |
| CDY07051 | Canola | nucleus | 25.37 | 29.82 |
| CDY66370 | Canola | nucleus | 24.63 | 29.2 |
| CDY20515 | Canola | cytosol | 24.63 | 29.2 |
| CDX74810 | Canola | nucleus | 24.63 | 29.2 |
| GSMUA_Achr10P... | Banana | cytosol | 35.07 | 29.01 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 27.61 | 26.24 |
| CDX83315 | Canola | cytosol | 24.63 | 23.91 |
Protein Annotations
| EnsemblPlants:CDY11163 | EnsemblPlantsGene:GSBRNA2T00049173001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF11 | PFAM:PF07011 | ProteinID:CDY11163 | ProteinID:CDY11163.1 | UniParc:UPI0004EEA753 | UniProt:A0A078FGI3 |
| MapMan:27.1.6.3.3 | : | : | : | : | : |
Description
BnaC06g24150DBnaC06g24150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGI3]
Coordinates
chrLK032009:-:869760..870467
Molecular Weight (calculated)
14941.7 Da
IEP (calculated)
8.527
GRAVY (calculated)
-0.438
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLLASDVSL KTLHSVMNFM ESVSTFDEIM SLSLMDGKVL QNFQKSFLQV RDILDQNRLL INEINQNHES KQADHLGRNV GLIRELNNNI RTVASLYGGL
101: SHSFAKSIDA SSGESTGTLR SNGKANNQKR SRCE
101: SHSFAKSIDA SSGESTGTLR SNGKANNQKR SRCE
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.