Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0621500-01 | Rice | nucleus | 80.33 | 83.76 |
| Zm00001d048801_P001 | Maize | cytosol | 79.51 | 75.19 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 81.15 | 73.88 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 80.33 | 73.13 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 81.15 | 72.79 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 65.57 | 72.07 |
| Solyc07g041340.1.1 | Tomato | cytosol | 62.3 | 69.72 |
| PGSC0003DMT400050352 | Potato | cytosol | 62.3 | 69.72 |
| PGSC0003DMT400025499 | Potato | nucleus | 54.92 | 68.37 |
| KRH02638 | Soybean | nucleus | 62.3 | 66.67 |
| KRH19266 | Soybean | cytosol | 61.48 | 65.79 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 59.84 | 64.04 |
| AT1G17455.1 | Thale cress | nucleus | 59.02 | 63.16 |
| KRH12520 | Soybean | cytosol | 57.38 | 62.5 |
| GSMUA_Achr9P29450_001 | Banana | cytosol | 57.38 | 62.5 |
| AT2G06255.1 | Thale cress | nucleus | 55.74 | 62.39 |
| KRH37456 | Soybean | nucleus | 56.56 | 61.61 |
| CDX81827 | Canola | nucleus | 54.92 | 59.82 |
| AT1G72630.1 | Thale cress | nucleus | 58.2 | 59.66 |
| CDY21748 | Canola | nucleus | 54.1 | 58.93 |
| Bra016046.1-P | Field mustard | nucleus | 54.1 | 58.93 |
| CDX96422 | Canola | nucleus | 54.1 | 58.93 |
| CDX72930 | Canola | nucleus | 54.1 | 58.93 |
| Bra030990.1-P | Field mustard | nucleus | 54.1 | 58.93 |
| Bra003872.1-P | Field mustard | cytosol | 48.36 | 58.42 |
| PGSC0003DMT400030304 | Potato | cytosol | 54.1 | 57.89 |
| Solyc12g049290.1.1 | Tomato | cytosol | 54.1 | 57.89 |
| KRH47584 | Soybean | nucleus | 53.28 | 57.02 |
| KRH06171 | Soybean | nucleus | 53.28 | 57.02 |
| Bra008041.1-P | Field mustard | nucleus | 53.28 | 56.52 |
| EER92142 | Sorghum | cytosol | 55.74 | 53.54 |
| VIT_11s0016g01370.t01 | Wine grape | nucleus | 63.11 | 51.68 |
| CDY11163 | Canola | cytosol | 50.82 | 46.27 |
| KXG35568 | Sorghum | mitochondrion | 42.62 | 25.12 |
Protein Annotations
| EnsemblPlants:EES08878 | EnsemblPlantsGene:SORBI_3005G194200 | EntrezGene:8068321 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 |
| PANTHER:PTHR33469 | PANTHER:PTHR33469:SF3 | PFAM:PF07011 | ProteinID:EES08878 | ProteinID:EES08878.1 | RefSeq:XP_002449890.1 |
| SEG:seg | UniParc:UPI0001A8656A | UniProt:C5Y6V3 | MapMan:27.1.6.3.3 | : | : |
Description
hypothetical protein
Coordinates
chr5:+:67754549..67756067
Molecular Weight (calculated)
12947.1 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.392
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDSYSGAM ANGGGQAVDG KLIQTFHKSF VQVQSLLDQN RMLISEINQN HESRAPDNLT RNVGLIRELN NNIRRVVGLY ADLSASFART MDASSDGDSS
101: GTAIRSSAAA AAAAGHKRVR PA
101: GTAIRSSAAA AAAAGHKRVR PA
001: MEGDTISRMM GSGVQMDGKI LQTFEKSFVQ VQNILDHNRL LINEINQNHE SKIPDNLGRN VGLIRELNNN VRRVAHLYVD LSNNFSKSME ASSEGDSSEG
101: RGNRRIRPA
101: RGNRRIRPA
Arabidopsis Description
EFL3Protein ELF4-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.