Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G149300.1 | Wheat | cytosol | 98.53 | 100.0 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 94.85 | 96.27 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 77.94 | 95.5 |
| Os11t0621500-01 | Rice | nucleus | 75.0 | 87.18 |
| EES08878 | Sorghum | cytosol | 72.79 | 81.15 |
| Zm00001d048801_P001 | Maize | cytosol | 72.79 | 76.74 |
| PGSC0003DMT400025499 | Potato | nucleus | 51.47 | 71.43 |
| PGSC0003DMT400050352 | Potato | cytosol | 55.88 | 69.72 |
| Solyc07g041340.1.1 | Tomato | cytosol | 54.41 | 67.89 |
| KRH02638 | Soybean | nucleus | 56.62 | 67.54 |
| KRH19266 | Soybean | cytosol | 55.88 | 66.67 |
| AT1G17455.1 | Thale cress | nucleus | 55.88 | 66.67 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 55.15 | 65.79 |
| CDX96422 | Canola | nucleus | 52.21 | 63.39 |
| CDX72930 | Canola | nucleus | 52.21 | 63.39 |
| Bra016046.1-P | Field mustard | nucleus | 52.21 | 63.39 |
| GSMUA_Achr9P29450_001 | Banana | cytosol | 52.21 | 63.39 |
| KRH12520 | Soybean | cytosol | 52.21 | 63.39 |
| Bra003872.1-P | Field mustard | cytosol | 47.06 | 63.37 |
| AT1G72630.1 | Thale cress | nucleus | 55.15 | 63.03 |
| PGSC0003DMT400030304 | Potato | cytosol | 52.21 | 62.28 |
| Solyc12g049290.1.1 | Tomato | cytosol | 52.21 | 62.28 |
| Bra008041.1-P | Field mustard | nucleus | 52.21 | 61.74 |
| KRH37456 | Soybean | nucleus | 50.74 | 61.61 |
| CDX81827 | Canola | nucleus | 50.74 | 61.61 |
| AT2G06255.1 | Thale cress | nucleus | 49.26 | 61.47 |
| CDY21748 | Canola | nucleus | 50.0 | 60.71 |
| Bra030990.1-P | Field mustard | nucleus | 50.0 | 60.71 |
| KRH47584 | Soybean | nucleus | 50.74 | 60.53 |
| KRH06171 | Soybean | nucleus | 50.74 | 60.53 |
| VIT_11s0016g01370.t01 | Wine grape | nucleus | 59.56 | 54.36 |
| CDY11163 | Canola | cytosol | 47.79 | 48.51 |
| TraesCS5D01G208200.1 | Wheat | nucleus | 36.76 | 41.67 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G149000.1 | EnsemblPlantsGene:TraesCS4D01G149000 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF3 | PFAM:PF07011 | SEG:seg | MapMan:27.1.6.3.3 | : | : |
Description
No Description!
Coordinates
chr4D:-:151983118..151983528
Molecular Weight (calculated)
14047.4 Da
IEP (calculated)
9.225
GRAVY (calculated)
-0.504
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGESFSGMG NGGGGGGGGG GGHHQVVDGK LIQTFHKSFV QVQSILDQNR MLISEINQNH ESRAPDSLTR NVGLIRELNN NIRRVVGLYA DLSASFAHRG
101: AAMDGGSSEG DSSGTLRSSD AAGRAAAAGQ KRVRPG
101: AAMDGGSSEG DSSGTLRSSD AAGRAAAAGQ KRVRPG
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.