Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G149300.1 | Wheat | cytosol | 95.5 | 79.1 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 95.5 | 77.94 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 93.69 | 77.61 |
| Os11t0621500-01 | Rice | nucleus | 74.77 | 70.94 |
| EES08878 | Sorghum | cytosol | 72.07 | 65.57 |
| Zm00001d048801_P001 | Maize | cytosol | 71.17 | 61.24 |
| PGSC0003DMT400025499 | Potato | nucleus | 50.45 | 57.14 |
| PGSC0003DMT400050352 | Potato | cytosol | 55.86 | 56.88 |
| Solyc07g041340.1.1 | Tomato | cytosol | 54.95 | 55.96 |
| KRH19266 | Soybean | cytosol | 56.76 | 55.26 |
| KRH02638 | Soybean | nucleus | 56.76 | 55.26 |
| AT1G17455.1 | Thale cress | nucleus | 56.76 | 55.26 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 54.95 | 53.51 |
| KRH12520 | Soybean | cytosol | 53.15 | 52.68 |
| Bra008041.1-P | Field mustard | nucleus | 54.05 | 52.17 |
| KRH06171 | Soybean | nucleus | 53.15 | 51.75 |
| KRH47584 | Soybean | nucleus | 53.15 | 51.75 |
| Bra003872.1-P | Field mustard | cytosol | 46.85 | 51.49 |
| AT1G72630.1 | Thale cress | nucleus | 54.95 | 51.26 |
| GSMUA_Achr9P29450_001 | Banana | cytosol | 51.35 | 50.89 |
| KRH37456 | Soybean | nucleus | 51.35 | 50.89 |
| CDX96422 | Canola | nucleus | 51.35 | 50.89 |
| CDX72930 | Canola | nucleus | 51.35 | 50.89 |
| Bra016046.1-P | Field mustard | nucleus | 51.35 | 50.89 |
| PGSC0003DMT400030304 | Potato | cytosol | 52.25 | 50.88 |
| Solyc12g049290.1.1 | Tomato | cytosol | 52.25 | 50.88 |
| CDX81827 | Canola | nucleus | 50.45 | 50.0 |
| CDY21748 | Canola | nucleus | 49.55 | 49.11 |
| Bra030990.1-P | Field mustard | nucleus | 49.55 | 49.11 |
| AT2G06255.1 | Thale cress | nucleus | 46.85 | 47.71 |
| VIT_11s0016g01370.t01 | Wine grape | nucleus | 60.36 | 44.97 |
| CDY11163 | Canola | cytosol | 48.65 | 40.3 |
| TraesCS5A01G201900.1 | Wheat | cytosol, nucleus, plastid | 38.74 | 35.83 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G146100.1 | EnsemblPlantsGene:TraesCS4A01G146100 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF3 | PFAM:PF07011 | SEG:seg | MapMan:27.1.6.3.3 | : | : |
Description
No Description!
Coordinates
chr4A:-:253445513..253445917
Molecular Weight (calculated)
11335.1 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.630
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGESFSGMG NGGGGGGGGH HQNRMLISEI NQNHESRAPD SLTRNVGLIR ELNNNIRRVV GLYADLSASF AHRGAAMDGG SSEGDSSGTL RSSDAAGRAA
101: AAAGQKRVRP G
101: AAAGQKRVRP G
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.