Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96422 | Canola | nucleus | 97.32 | 97.32 |
| AT1G72630.1 | Thale cress | nucleus | 94.64 | 89.08 |
| CDX81827 | Canola | nucleus | 75.0 | 75.0 |
| CDY21748 | Canola | nucleus | 74.11 | 74.11 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 67.86 | 66.67 |
| CDY11163 | Canola | cytosol | 76.79 | 64.18 |
| Os11t0621500-01 | Rice | nucleus | 64.29 | 61.54 |
| GSMUA_Achr8P01310_001 | Banana | nucleus | 59.82 | 60.91 |
| KRH06171 | Soybean | nucleus | 61.61 | 60.53 |
| KRH47584 | Soybean | nucleus | 61.61 | 60.53 |
| EES08878 | Sorghum | cytosol | 58.93 | 54.1 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 63.39 | 52.99 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 63.39 | 52.99 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 63.39 | 52.21 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 50.89 | 51.35 |
| Zm00001d048801_P001 | Maize | cytosol | 58.93 | 51.16 |
| CDY07051 | Canola | nucleus | 33.93 | 33.33 |
| GSMUA_Achr10P... | Banana | cytosol | 47.32 | 32.72 |
| CDY07627 | Canola | nucleus | 33.04 | 32.46 |
| CDY61710 | Canola | nucleus | 32.14 | 32.14 |
| CDY20512 | Canola | nucleus | 32.14 | 31.86 |
| CDY60339 | Canola | nucleus | 32.14 | 31.58 |
| CDY66370 | Canola | nucleus | 31.25 | 30.97 |
| CDY20515 | Canola | cytosol | 31.25 | 30.97 |
| CDX74810 | Canola | nucleus | 31.25 | 30.97 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 33.04 | 26.24 |
| CDX83315 | Canola | cytosol | 27.68 | 22.46 |
Protein Annotations
| EnsemblPlants:CDX72930 | EnsemblPlantsGene:GSBRNA2T00103355001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF11 | PFAM:PF07011 | ProteinID:CDX72930 | ProteinID:CDX72930.1 | UniParc:UPI00026633B2 | MapMan:27.1.6.3.3 |
Description
BnaC06g33780D
Coordinates
chrLK031797:+:1204744..1205987
Molecular Weight (calculated)
12665.7 Da
IEP (calculated)
6.253
GRAVY (calculated)
-0.802
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRMEGDVF SGFGERYQMD GKVLQNFQKS FVQVQDILDQ NRLLINEINQ NHESKQADHL GRNVGLIREL NNNIRTVASL YGDLSHSFAK SIDASSEGES
101: TGTNNQKRFR SG
101: TGTNNQKRFR SG
001: MESRMEGDVY SGFGERYQMD GKLLQNFQKS FVQVQDILDQ NRLLINEINQ NHESKQADHL GRNVGLIREL NNNIRTVASL YGDLSHSFAR SVDASSEGES
101: TGTLKSDGKA NNQKRFRSG
101: TGTLKSDGKA NNQKRFRSG
Arabidopsis Description
EFL2Protein ELF4-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BS8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.