Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66370 | Canola | nucleus | 91.96 | 91.15 |
| CDX74810 | Canola | nucleus | 91.07 | 90.27 |
| CDY20512 | Canola | nucleus | 90.18 | 89.38 |
| CDY60339 | Canola | nucleus | 90.18 | 88.6 |
| CDY20515 | Canola | cytosol | 88.39 | 87.61 |
| CDY07051 | Canola | nucleus | 88.39 | 86.84 |
| AT2G40080.1 | Thale cress | nucleus | 85.71 | 86.49 |
| CDY07627 | Canola | nucleus | 84.82 | 83.33 |
| KRH31142 | Soybean | nucleus | 53.57 | 48.78 |
| PGSC0003DMT400016935 | Potato | nucleus | 46.43 | 46.85 |
| PGSC0003DMT400089865 | Potato | nucleus | 50.89 | 44.88 |
| Solyc06g051660.1.1 | Tomato | nucleus | 48.21 | 44.63 |
| PGSC0003DMT400003078 | Potato | nucleus | 45.54 | 42.86 |
| KRG97737 | Soybean | nucleus, plastid | 51.79 | 42.34 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 52.68 | 40.69 |
| Solyc06g051680.1.1 | Tomato | nucleus | 44.64 | 40.65 |
| CDX72930 | Canola | nucleus | 32.14 | 32.14 |
| CDY21748 | Canola | nucleus | 31.25 | 31.25 |
| CDX96422 | Canola | nucleus | 31.25 | 31.25 |
| CDX81827 | Canola | nucleus | 31.25 | 31.25 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 37.5 | 29.79 |
| CDX83315 | Canola | cytosol | 34.82 | 28.26 |
| CDY11163 | Canola | cytosol | 30.36 | 25.37 |
Protein Annotations
| EnsemblPlants:CDY61710 | EnsemblPlantsGene:GSBRNA2T00034255001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF5 | PFAM:PF07011 | ProteinID:CDY61710 | ProteinID:CDY61710.1 | SEG:seg | UniParc:UPI0004EB8246 |
| UniProt:A0A078J9G6 | MapMan:27.1.6.3.3 | : | : | : | : |
Description
BnaC04g56730DBnaC04g56730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9G6]
Coordinates
chrLK034030:+:21029..21821
Molecular Weight (calculated)
12478.4 Da
IEP (calculated)
9.941
GRAVY (calculated)
-1.066
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRNGETKRR RNVAEDAGQG GEDPAMWENL DRNFRQVQSV LDRNRSLIQQ VNDNHQSRMA DNMSKNVALI QELNGNITKV VSMYSDLNTN FSSAFHGGKN
101: GHEGGSSGTR AN
101: GHEGGSSGTR AN
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.