Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089865 | Potato | nucleus | 88.29 | 77.17 |
| Solyc06g051660.1.1 | Tomato | nucleus | 74.77 | 68.59 |
| PGSC0003DMT400003078 | Potato | nucleus | 54.05 | 50.42 |
| KRH31142 | Soybean | nucleus | 53.15 | 47.97 |
| Bra000165.1-P | Field mustard | nucleus | 47.75 | 46.49 |
| CDY07627 | Canola | nucleus | 47.75 | 46.49 |
| CDY61710 | Canola | nucleus | 46.85 | 46.43 |
| Bra004991.1-P | Field mustard | nucleus | 46.85 | 46.02 |
| CDX74810 | Canola | nucleus | 46.85 | 46.02 |
| AT2G40080.1 | Thale cress | nucleus | 45.95 | 45.95 |
| CDY60339 | Canola | nucleus | 46.85 | 45.61 |
| CDY66370 | Canola | nucleus | 45.95 | 45.13 |
| CDY20515 | Canola | cytosol | 45.95 | 45.13 |
| CDY20512 | Canola | nucleus | 45.95 | 45.13 |
| CDY07051 | Canola | nucleus | 45.95 | 44.74 |
| Bra017035.1-P | Field mustard | nucleus | 45.05 | 43.86 |
| KRG97737 | Soybean | nucleus, plastid | 49.55 | 40.15 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 47.75 | 36.55 |
| PGSC0003DMT400078042 | Potato | nucleus | 40.54 | 33.58 |
| PGSC0003DMT400025499 | Potato | nucleus | 28.83 | 32.65 |
| PGSC0003DMT400050352 | Potato | cytosol | 31.53 | 32.11 |
| PGSC0003DMT400030304 | Potato | cytosol | 29.73 | 28.95 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016935 | EnsemblPlantsGene:PGSC0003DMG400006620 | EntrezGene:107060485 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 |
| PANTHER:PTHR33469 | PANTHER:PTHR33469:SF5 | PFAM:PF07011 | PGSC:PGSC0003DMG400006620 | RefSeq:XP_015163940.1 | UniParc:UPI0002965953 |
| UniProt:M1A8C8 | MapMan:27.1.6.3.3 | : | : | : | : |
Description
EARLY flowering 4 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006620]
Coordinates
chr6:+:26354567..26354902
Molecular Weight (calculated)
12981.1 Da
IEP (calculated)
9.855
GRAVY (calculated)
-0.991
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTFKRHRQ TLAKLQSLTT NDRRRPHDNG DLSTEEGNSE MWNNFSNRFR QVQSVLNRNR SLIQQVNENH QSRTNDNMVQ NVSLIQELNG NISKVVSLYS
101: YISTNFSTMF G
101: YISTNFSTMF G
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.