Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017035.1-P Field mustard nucleus 92.11 92.11
CDY61710 Canola nucleus 86.84 88.39
CDY66370 Canola nucleus 81.58 82.3
CDX74810 Canola nucleus 80.7 81.42
CDY20515 Canola cytosol 80.7 81.42
CDY20512 Canola nucleus 79.82 80.53
AT2G40080.1 Thale cress nucleus 78.07 80.18
CDY60339 Canola nucleus 78.95 78.95
CDY07627 Canola nucleus 73.68 73.68
KRH31142 Soybean nucleus 52.63 48.78
PGSC0003DMT400016935 Potato nucleus 44.74 45.95
Solyc06g051660.1.1 Tomato nucleus 45.61 42.98
PGSC0003DMT400003078 Potato nucleus 44.74 42.86
PGSC0003DMT400089865 Potato nucleus 47.37 42.52
Solyc06g051680.1.1 Tomato nucleus 44.74 41.46
KRG97737 Soybean nucleus, plastid 49.12 40.88
VIT_13s0067g00860.t01 Wine grape nucleus 49.12 38.62
CDX72930 Canola nucleus 33.33 33.93
CDY21748 Canola nucleus 32.46 33.04
CDX96422 Canola nucleus 32.46 33.04
CDX81827 Canola nucleus 32.46 33.04
CDX95740 Canola cytosol, mitochondrion, nucleus 35.96 29.08
CDX83315 Canola cytosol 34.21 28.26
CDY11163 Canola cytosol 29.82 25.37
Protein Annotations
EnsemblPlants:CDY07051EnsemblPlantsGene:GSBRNA2T00123369001GO:GO:0008150GO:GO:0042753InterPro:EARLY_FLOWERING_4PANTHER:PTHR33469
PANTHER:PTHR33469:SF5PFAM:PF07011ProteinID:CDY07051ProteinID:CDY07051.1SEG:segUniParc:UPI0004EE5332
MapMan:27.1.6.3.3:::::
Description
BnaA04g22640D
Coordinates
chrLK031974:-:848259..848925
Molecular Weight (calculated)
12601.5 Da
IEP (calculated)
9.941
GRAVY (calculated)
-1.052
Length
114 amino acids
Sequence
(BLAST)
001: MKRNGETKRR RNVAEDAGHG GGGEDPAMWE NLDRNFRQVQ SVLDRNRSLI QQVNDNHQSR MADNMSKNVA LIQELNGNIT KVVSMYSDLN TNFSSAFHGG
101: KNGHEGGSSG TRAN
Best Arabidopsis Sequence Match ( AT2G40080.1 )
(BLAST)
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.