Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra017035.1-P | Field mustard | nucleus | 92.11 | 92.11 |
CDY61710 | Canola | nucleus | 86.84 | 88.39 |
CDY66370 | Canola | nucleus | 81.58 | 82.3 |
CDX74810 | Canola | nucleus | 80.7 | 81.42 |
CDY20515 | Canola | cytosol | 80.7 | 81.42 |
CDY20512 | Canola | nucleus | 79.82 | 80.53 |
AT2G40080.1 | Thale cress | nucleus | 78.07 | 80.18 |
CDY60339 | Canola | nucleus | 78.95 | 78.95 |
CDY07627 | Canola | nucleus | 73.68 | 73.68 |
KRH31142 | Soybean | nucleus | 52.63 | 48.78 |
PGSC0003DMT400016935 | Potato | nucleus | 44.74 | 45.95 |
Solyc06g051660.1.1 | Tomato | nucleus | 45.61 | 42.98 |
PGSC0003DMT400003078 | Potato | nucleus | 44.74 | 42.86 |
PGSC0003DMT400089865 | Potato | nucleus | 47.37 | 42.52 |
Solyc06g051680.1.1 | Tomato | nucleus | 44.74 | 41.46 |
KRG97737 | Soybean | nucleus, plastid | 49.12 | 40.88 |
VIT_13s0067g00860.t01 | Wine grape | nucleus | 49.12 | 38.62 |
CDX72930 | Canola | nucleus | 33.33 | 33.93 |
CDY21748 | Canola | nucleus | 32.46 | 33.04 |
CDX96422 | Canola | nucleus | 32.46 | 33.04 |
CDX81827 | Canola | nucleus | 32.46 | 33.04 |
CDX95740 | Canola | cytosol, mitochondrion, nucleus | 35.96 | 29.08 |
CDX83315 | Canola | cytosol | 34.21 | 28.26 |
CDY11163 | Canola | cytosol | 29.82 | 25.37 |
Protein Annotations
EnsemblPlants:CDY07051 | EnsemblPlantsGene:GSBRNA2T00123369001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
PANTHER:PTHR33469:SF5 | PFAM:PF07011 | ProteinID:CDY07051 | ProteinID:CDY07051.1 | SEG:seg | UniParc:UPI0004EE5332 |
MapMan:27.1.6.3.3 | : | : | : | : | : |
Description
BnaA04g22640D
Coordinates
chrLK031974:-:848259..848925
Molecular Weight (calculated)
12601.5 Da
IEP (calculated)
9.941
GRAVY (calculated)
-1.052
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRNGETKRR RNVAEDAGHG GGGEDPAMWE NLDRNFRQVQ SVLDRNRSLI QQVNDNHQSR MADNMSKNVA LIQELNGNIT KVVSMYSDLN TNFSSAFHGG
101: KNGHEGGSSG TRAN
101: KNGHEGGSSG TRAN
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.