Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003078 | Potato | nucleus | 65.04 | 67.23 |
| Solyc06g051660.1.1 | Tomato | nucleus | 50.41 | 51.24 |
| KRH31142 | Soybean | nucleus | 47.15 | 47.15 |
| AT2G40080.1 | Thale cress | nucleus | 41.46 | 45.95 |
| Bra017035.1-P | Field mustard | nucleus | 41.46 | 44.74 |
| CDY07051 | Canola | nucleus | 41.46 | 44.74 |
| CDY61710 | Canola | nucleus | 40.65 | 44.64 |
| Bra004991.1-P | Field mustard | nucleus | 40.65 | 44.25 |
| CDX74810 | Canola | nucleus | 40.65 | 44.25 |
| CDY20512 | Canola | nucleus | 40.65 | 44.25 |
| CDY20515 | Canola | cytosol | 40.65 | 44.25 |
| Bra000165.1-P | Field mustard | nucleus | 40.65 | 43.86 |
| CDY60339 | Canola | nucleus | 40.65 | 43.86 |
| CDY07627 | Canola | nucleus | 40.65 | 43.86 |
| CDY66370 | Canola | nucleus | 39.84 | 43.36 |
| KRG97737 | Soybean | nucleus, plastid | 47.15 | 42.34 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 41.46 | 35.17 |
| Solyc07g041340.1.1 | Tomato | cytosol | 30.08 | 33.95 |
| Solyc06g076960.1.1 | Tomato | cytosol | 36.59 | 33.58 |
| Solyc11g028200.1.1 | Tomato | cytosol, nucleus, plastid | 35.77 | 32.84 |
| Solyc12g049290.1.1 | Tomato | cytosol | 28.46 | 30.7 |
Protein Annotations
| EnsemblPlants:Solyc06g051680.1.1 | EnsemblPlantsGene:Solyc06g051680.1 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF5 | PFAM:PF07011 | UniParc:UPI00027670CE | UniProt:K4C5V8 | MapMan:27.1.6.3.3 | : |
Description
No Description!
Coordinates
chr6:-:35211625..35211996
Molecular Weight (calculated)
14561.7 Da
IEP (calculated)
7.920
GRAVY (calculated)
-1.170
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTSNFNRH RQTITKSNSR KINNNRHRVR DNSTVDFNME EGDSSEMWNN FSNNFRQVQS VLDRNRLLIQ QVNENHQSRT HDSMVQNVSL IQELNGNISK
101: VSSIYSDFNT DFTNMIHQRK NDV
101: VSSIYSDFNT DFTNMIHQRK NDV
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.