Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66370 | Canola | nucleus | 98.23 | 98.23 |
| CDX74810 | Canola | nucleus | 98.23 | 98.23 |
| CDY20515 | Canola | cytosol | 95.58 | 95.58 |
| CDY61710 | Canola | nucleus | 89.38 | 90.18 |
| CDY60339 | Canola | nucleus | 89.38 | 88.6 |
| AT2G40080.1 | Thale cress | nucleus | 86.73 | 88.29 |
| CDY07627 | Canola | nucleus | 84.07 | 83.33 |
| CDY07051 | Canola | nucleus | 80.53 | 79.82 |
| KRH31142 | Soybean | nucleus | 52.21 | 47.97 |
| PGSC0003DMT400016935 | Potato | nucleus | 45.13 | 45.95 |
| PGSC0003DMT400089865 | Potato | nucleus | 49.56 | 44.09 |
| Solyc06g051660.1.1 | Tomato | nucleus | 46.9 | 43.8 |
| PGSC0003DMT400003078 | Potato | nucleus | 45.13 | 42.86 |
| KRG97737 | Soybean | nucleus, plastid | 50.44 | 41.61 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 52.21 | 40.69 |
| Solyc06g051680.1.1 | Tomato | nucleus | 44.25 | 40.65 |
| CDY21748 | Canola | nucleus | 31.86 | 32.14 |
| CDX96422 | Canola | nucleus | 31.86 | 32.14 |
| CDX81827 | Canola | nucleus | 31.86 | 32.14 |
| CDX72930 | Canola | nucleus | 31.86 | 32.14 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 38.05 | 30.5 |
| CDX83315 | Canola | cytosol | 36.28 | 29.71 |
| CDY11163 | Canola | cytosol | 30.09 | 25.37 |
Protein Annotations
| EnsemblPlants:CDY20512 | EnsemblPlantsGene:GSBRNA2T00012622001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF5 | PFAM:PF07011 | ProteinID:CDY20512 | ProteinID:CDY20512.1 | SEG:seg | UniParc:UPI0004EC6CB7 |
| UniProt:A0A078G6E0 | MapMan:27.1.6.3.3 | : | : | : | : |
Description
BnaC04g05320DBnaC04g05320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6E0]
Coordinates
chrLK032108:-:639807..640752
Molecular Weight (calculated)
12541.5 Da
IEP (calculated)
9.939
GRAVY (calculated)
-1.092
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRNGETKRR RNVAEEAEQG GGDPAMWEDL DRNFRQVQSV LDRNRSLIQQ VNDNHQSRMA DNMSKNVALI QELNGNISKV ASMYSDLNTN FSSAFHGGKN
101: GRDGGGTTGT RAN
101: GRDGGGTTGT RAN
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.