Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83315 | Canola | cytosol | 64.54 | 65.94 |
| AT2G29950.1 | Thale cress | cytosol | 48.94 | 55.2 |
| CDX74810 | Canola | nucleus | 30.5 | 38.05 |
| CDY20515 | Canola | cytosol | 30.5 | 38.05 |
| CDY20512 | Canola | nucleus | 30.5 | 38.05 |
| CDX81827 | Canola | nucleus | 29.79 | 37.5 |
| CDY61710 | Canola | nucleus | 29.79 | 37.5 |
| CDY21748 | Canola | nucleus | 29.79 | 37.5 |
| CDY66370 | Canola | nucleus | 29.79 | 37.17 |
| VIT_06s0004g06600.t01 | Wine grape | nucleus | 31.91 | 36.0 |
| CDY60339 | Canola | nucleus | 29.08 | 35.96 |
| CDY07051 | Canola | nucleus | 29.08 | 35.96 |
| CDY07627 | Canola | nucleus | 28.37 | 35.09 |
| CDX96422 | Canola | nucleus | 26.24 | 33.04 |
| CDX72930 | Canola | nucleus | 26.24 | 33.04 |
| Solyc06g076960.1.1 | Tomato | cytosol | 31.21 | 32.84 |
| PGSC0003DMT400078042 | Potato | nucleus | 30.5 | 32.09 |
| Solyc11g028200.1.1 | Tomato | cytosol, nucleus, plastid | 30.5 | 32.09 |
| CDY11163 | Canola | cytosol | 26.24 | 27.61 |
| KRH17036 | Soybean | cytosol | 31.91 | 26.79 |
Protein Annotations
| EnsemblPlants:CDX95740 | EnsemblPlantsGene:GSBRNA2T00101646001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF1 | PFAM:PF07011 | ProteinID:CDX95740 | ProteinID:CDX95740.1 | SEG:seg | UniParc:UPI0004EDF8CC |
| MapMan:27.1.6.3.3 | : | : | : | : | : |
Description
BnaC03g26210D
Coordinates
chrLK031890:-:1060086..1060511
Molecular Weight (calculated)
15788.2 Da
IEP (calculated)
5.290
GRAVY (calculated)
-0.848
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPRRRSIV GNNRKSSKRA LTELNKDDDH VTAAENEEFN DVEVWNTLSN GFKRAQIVLD QNRDLIQRVN DNHLSRIPEN VSRNVGLINE INGNISRVME
101: IYTDLAVDFA KGIEEAKSGD TDTTTATTSG SYGRGQSSYR S
101: IYTDLAVDFA KGIEEAKSGD TDTTTATTSG SYGRGQSSYR S
001: MEASRNRSLV GNNRSPEMNE NDGEDVAASA AVEDVEVWDT LSNGFKRAQL YLDQNRDLIQ RVNENHMSRI PDNVSRNVGL INEINGNISQ VMEIYSDLSL
101: NFAKKFDQRR RTTKDGDTTT TTTGS
101: NFAKKFDQRR RTTKDGDTTT TTTGS
Arabidopsis Description
EFL1Protein ELF4-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O80877]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.