Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078042 | Potato | nucleus | 41.6 | 38.81 |
| Solyc06g076960.1.1 | Tomato | cytosol | 40.8 | 38.06 |
| Solyc11g028200.1.1 | Tomato | cytosol, nucleus, plastid | 40.0 | 37.31 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 43.2 | 37.24 |
| AT2G29950.1 | Thale cress | cytosol | 35.2 | 35.2 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 32.0 | 35.09 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 36.0 | 31.91 |
| Bra000468.1-P | Field mustard | cytosol | 33.6 | 30.43 |
| VIT_11s0016g01370.t01 | Wine grape | nucleus | 34.4 | 28.86 |
| KRH17036 | Soybean | cytosol | 38.4 | 28.57 |
| CDX83315 | Canola | cytosol | 31.2 | 28.26 |
Protein Annotations
| ArrayExpress:VIT_06s0004g06600 | EMBL:AM486316 | EMBL:FN594951 | EnsemblPlants:VIT_06s0004g06600.t01 | EnsemblPlantsGene:VIT_06s0004g06600 | EntrezGene:104879529 |
| GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 | PANTHER:PTHR33469:SF1 | PFAM:PF07011 |
| ProteinID:CAN79813 | ProteinID:CAN79813.1 | ProteinID:CCB43478 | ProteinID:CCB43478.1 | RefSeq:XP_010650900.1 | SEG:seg |
| UniParc:UPI00015C7A4B | UniProt:F6GUR5 | MapMan:27.1.6.3.3 | : | : | : |
Description
No Description!
Coordinates
chr6:+:7330769..7331146
Molecular Weight (calculated)
14370.4 Da
IEP (calculated)
4.397
GRAVY (calculated)
-1.066
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGPSDNTH RHSLEDKDDD DDEEGCDAEV WETLSRSFDQ VQSVLDQNRL LIQQVNENQQ SRIHDNLVKN VSLTREINGN ICKVISMYSK LSADFVDIVR
101: RRRAENDGDE KKKEESVDLN LPPSR
101: RRRAENDGDE KKKEESVDLN LPPSR
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.