Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050352 | Potato | cytosol | 66.44 | 90.83 |
| Solyc07g041340.1.1 | Tomato | cytosol | 65.77 | 89.91 |
| KRH02638 | Soybean | nucleus | 67.79 | 88.6 |
| KRH19266 | Soybean | cytosol | 67.11 | 87.72 |
| PGSC0003DMT400025499 | Potato | nucleus | 55.7 | 84.69 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 60.4 | 78.95 |
| KRH37456 | Soybean | nucleus | 57.72 | 76.79 |
| KRH12520 | Soybean | cytosol | 57.05 | 75.89 |
| Os11t0621500-01 | Rice | nucleus | 55.7 | 70.94 |
| AT2G06255.1 | Thale cress | nucleus | 51.01 | 69.72 |
| EES08878 | Sorghum | cytosol | 51.68 | 63.11 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 54.36 | 60.45 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 54.36 | 60.45 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 44.97 | 60.36 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 54.36 | 59.56 |
| Zm00001d048801_P001 | Maize | cytosol | 50.34 | 58.14 |
| VIT_06s0004g06600.t01 | Wine grape | nucleus | 28.86 | 34.4 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 28.86 | 29.66 |
Protein Annotations
| ArrayExpress:VIT_11s0016g01370 | EMBL:FN595756 | EnsemblPlants:VIT_11s0016g01370.t01 | EnsemblPlantsGene:VIT_11s0016g01370 | EntrezGene:100261078 | EntrezGene:LOC100261078 |
| GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 | PANTHER:PTHR33469:SF3 | PFAM:PF07011 |
| ProteinID:CCB51414 | ProteinID:CCB51414.1 | RefSeq:XP_002279914 | RefSeq:XP_002279914.1 | SEG:seg | UniParc:UPI0002108487 |
| UniProt:F6HGP9 | wikigene:100261078 | wikigene:LOC100261078 | MapMan:27.1.6.3.3 | : | : |
Description
No Description!
Coordinates
chr11:+:1102048..1103836
Molecular Weight (calculated)
16702.7 Da
IEP (calculated)
10.209
GRAVY (calculated)
-0.813
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPDFQGEES VYLLHVKQKP SSSNELKIKK KRKKNMEGDT FSGLGNGTQI DGKVLQTFQK SFVQVQNILD QNRLLINEIN QNHESKIPDN LSRNVGLIRE
101: LNNNIRRVVD LYADLSTSFT KSVDGSSEGD SSGALRSDGK AGHKRNRPV
101: LNNNIRRVVD LYADLSTSFT KSVDGSSEGD SSGALRSDGK AGHKRNRPV
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.