Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES08878 | Sorghum | cytosol | 83.76 | 80.33 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 87.18 | 76.12 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 86.32 | 75.37 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 87.18 | 75.0 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 70.94 | 74.77 |
| Zm00001d048801_P001 | Maize | cytosol | 81.2 | 73.64 |
| PGSC0003DMT400050352 | Potato | cytosol | 68.38 | 73.39 |
| Solyc07g041340.1.1 | Tomato | cytosol | 66.67 | 71.56 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 69.23 | 71.05 |
| KRH02638 | Soybean | nucleus | 69.23 | 71.05 |
| PGSC0003DMT400025499 | Potato | nucleus | 58.97 | 70.41 |
| KRH19266 | Soybean | cytosol | 68.38 | 70.18 |
| AT1G17455.1 | Thale cress | nucleus | 66.67 | 68.42 |
| GSMUA_Achr9P29450_001 | Banana | cytosol | 63.25 | 66.07 |
| KRH12520 | Soybean | cytosol | 62.39 | 65.18 |
| KRH06171 | Soybean | nucleus | 63.25 | 64.91 |
| KRH47584 | Soybean | nucleus | 63.25 | 64.91 |
| Bra003872.1-P | Field mustard | cytosol | 55.56 | 64.36 |
| CDX96422 | Canola | nucleus | 61.54 | 64.29 |
| KRH37456 | Soybean | nucleus | 61.54 | 64.29 |
| Bra016046.1-P | Field mustard | nucleus | 61.54 | 64.29 |
| CDX72930 | Canola | nucleus | 61.54 | 64.29 |
| PGSC0003DMT400030304 | Potato | cytosol | 62.39 | 64.04 |
| Solyc12g049290.1.1 | Tomato | cytosol | 62.39 | 64.04 |
| AT1G72630.1 | Thale cress | nucleus | 64.96 | 63.87 |
| AT2G06255.1 | Thale cress | nucleus | 58.97 | 63.3 |
| Bra008041.1-P | Field mustard | nucleus | 61.54 | 62.61 |
| CDY21748 | Canola | nucleus | 58.97 | 61.61 |
| CDX81827 | Canola | nucleus | 58.97 | 61.61 |
| Bra030990.1-P | Field mustard | nucleus | 58.97 | 61.61 |
| Os03t0410300-01 | Rice | cytosol | 56.41 | 57.89 |
| VIT_11s0016g01370.t01 | Wine grape | nucleus | 70.94 | 55.7 |
| CDY11163 | Canola | cytosol | 57.27 | 50.0 |
| Os08t0366200-01 | Rice | cytosol, nucleus, plastid | 42.73 | 34.72 |
Protein Annotations
| MapMan:27.1.6.3.3 | EntrezGene:4350949 | ProteinID:ABA94824.1 | ProteinID:ABA94825.1 | ProteinID:ABG22557.1 | EMBL:AK068037 |
| ProteinID:BAF28663.1 | ProteinID:BAT14910.1 | InterPro:EARLY_FLOWERING_4 | ProteinID:EEE52489.1 | GO:GO:0008150 | GO:GO:0042753 |
| EnsemblPlantsGene:Os11g0621500 | EnsemblPlants:Os11t0621500-01 | PFAM:PF07011 | PANTHER:PTHR33469 | PANTHER:PTHR33469:SF3 | UniProt:Q2R122 |
| UniParc:UPI0000681E4E | RefSeq:XP_015617989.1 | RefSeq:XP_015617990.1 | RefSeq:XP_015617991.1 | RefSeq:XP_015617992.1 | RefSeq:XP_015617994.1 |
| RefSeq:XP_015617995.1 | RefSeq:XP_015617996.1 | RefSeq:XP_015617997.1 | RefSeq:XP_015617998.1 | : | : |
Description
ELF4_chr.11Similar to EARLY FLOWERING 4 (Fragment). (Os11t0621500-01);Non-protein coding transcript. (Os11t0621500-02)
Coordinates
chr11:+:24230431..24233404
Molecular Weight (calculated)
12781.9 Da
IEP (calculated)
9.218
GRAVY (calculated)
-0.662
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDSFSGMA NGGQVDNKLI QTFHKSFVQV QSILDQNRML INEINQNHES RAPDNLTRNV GLIRELNNNI RRVVGLYADL SASFARTMDA SSEGDSSGTL
101: RSSDGAGRSG QKRVRPG
101: RSSDGAGRSG QKRVRPG
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.