Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21748 | Canola | nucleus | 96.43 | 96.43 |
| Bra030990.1-P | Field mustard | nucleus | 91.07 | 91.07 |
| AT1G17455.1 | Thale cress | nucleus | 80.36 | 78.95 |
| CDX72930 | Canola | nucleus | 75.0 | 75.0 |
| CDX96422 | Canola | nucleus | 75.0 | 75.0 |
| GSMUA_Achr8P01310_001 | Banana | nucleus | 66.07 | 67.27 |
| VIT_09s0002g01440.t01 | Wine grape | nucleus | 63.39 | 62.28 |
| KRH06171 | Soybean | nucleus | 60.71 | 59.65 |
| KRH47584 | Soybean | nucleus | 60.71 | 59.65 |
| Os11t0621500-01 | Rice | nucleus | 61.61 | 58.97 |
| EES08878 | Sorghum | cytosol | 59.82 | 54.92 |
| CDY11163 | Canola | cytosol | 64.29 | 53.73 |
| TraesCS4B01G149300.1 | Wheat | cytosol | 61.61 | 51.49 |
| HORVU4Hr1G030640.1 | Barley | cytosol | 61.61 | 51.49 |
| TraesCS4D01G149000.1 | Wheat | cytosol | 61.61 | 50.74 |
| TraesCS4A01G146100.1 | Wheat | cytosol | 50.0 | 50.45 |
| Zm00001d048801_P001 | Maize | cytosol | 56.25 | 48.84 |
| GSMUA_Achr10P... | Banana | cytosol | 47.32 | 32.72 |
| CDY07051 | Canola | nucleus | 33.04 | 32.46 |
| CDY20512 | Canola | nucleus | 32.14 | 31.86 |
| CDY07627 | Canola | nucleus | 32.14 | 31.58 |
| CDY61710 | Canola | nucleus | 31.25 | 31.25 |
| CDY66370 | Canola | nucleus | 31.25 | 30.97 |
| CDY20515 | Canola | cytosol | 31.25 | 30.97 |
| CDX74810 | Canola | nucleus | 31.25 | 30.97 |
| CDY60339 | Canola | nucleus | 31.25 | 30.7 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 37.5 | 29.79 |
| CDX83315 | Canola | cytosol | 35.71 | 28.99 |
Protein Annotations
| EnsemblPlants:CDX81827 | EnsemblPlantsGene:GSBRNA2T00136771001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF11 | PFAM:PF07011 | ProteinID:CDX81827 | ProteinID:CDX81827.1 | SEG:seg | UniParc:UPI0004EF02FB |
| MapMan:27.1.6.3.3 | : | : | : | : | : |
Description
BnaC08g37740D
Coordinates
chrLK031826:+:1013185..1014202
Molecular Weight (calculated)
12304.2 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.646
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGVISGFG DRHTNVDGKV LQSFQKSFVN VQDILDQNRL LINEINQNHE SNQPENLSRN VGLIKELNNN IRRVASLYGD LSHSFSKSVD ASSDGDSSGT
101: LGIANQKRFR SG
101: LGIANQKRFR SG
001: MEGDVLSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV GLIKELNNNI RRVASLYGDL SHSFARSVDA SSEGESSGTL
101: KSDGKANQKR FRSG
101: KSDGKANQKR FRSG
Arabidopsis Description
EFL4ELF4-L4 [Source:UniProtKB/TrEMBL;Acc:A0A178WKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.