Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004991.1-P | Field mustard | nucleus | 97.35 | 97.35 |
| CDX74810 | Canola | nucleus | 97.35 | 97.35 |
| CDY20512 | Canola | nucleus | 95.58 | 95.58 |
| CDY66370 | Canola | nucleus | 95.58 | 95.58 |
| CDY61710 | Canola | nucleus | 87.61 | 88.39 |
| AT2G40080.1 | Thale cress | nucleus | 86.73 | 88.29 |
| CDY60339 | Canola | nucleus | 87.61 | 86.84 |
| CDY07627 | Canola | nucleus | 82.3 | 81.58 |
| CDY07051 | Canola | nucleus | 81.42 | 80.7 |
| KRH31142 | Soybean | nucleus | 52.21 | 47.97 |
| PGSC0003DMT400016935 | Potato | nucleus | 45.13 | 45.95 |
| Solyc06g051660.1.1 | Tomato | nucleus | 46.9 | 43.8 |
| PGSC0003DMT400003078 | Potato | nucleus | 46.02 | 43.7 |
| PGSC0003DMT400089865 | Potato | nucleus | 48.67 | 43.31 |
| KRG97737 | Soybean | nucleus, plastid | 50.44 | 41.61 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 52.21 | 40.69 |
| Solyc06g051680.1.1 | Tomato | nucleus | 44.25 | 40.65 |
| CDY21748 | Canola | nucleus | 30.97 | 31.25 |
| CDX96422 | Canola | nucleus | 30.97 | 31.25 |
| CDX81827 | Canola | nucleus | 30.97 | 31.25 |
| CDX72930 | Canola | nucleus | 30.97 | 31.25 |
| CDX95740 | Canola | cytosol, mitochondrion, nucleus | 38.05 | 30.5 |
| CDX83315 | Canola | cytosol | 36.28 | 29.71 |
| CDY11163 | Canola | cytosol | 29.2 | 24.63 |
Protein Annotations
| EnsemblPlants:CDY20515 | EnsemblPlantsGene:GSBRNA2T00012626001 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 | PANTHER:PTHR33469 |
| PANTHER:PTHR33469:SF5 | PFAM:PF07011 | ProteinID:CDY20515 | ProteinID:CDY20515.1 | SEG:seg | UniParc:UPI0004EE003A |
| UniProt:A0A078G1Z3 | MapMan:27.1.6.3.3 | : | : | : | : |
Description
BnaC04g05290DBnaC04g05290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Z3]
Coordinates
chrLK032108:-:658819..659389
Molecular Weight (calculated)
12527.4 Da
IEP (calculated)
7.705
GRAVY (calculated)
-1.058
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRNGETNQR RNVAEETEQG GGDPAMWEDL DRNFRQVQSV LDRNRSLIQQ VNDNHQSRMA DNMSKNVALI QELNGNISKV VSMYSDLNTN FSSAFHGGKN
101: GRDGGGATGT RAN
101: GRDGGGATGT RAN
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.