Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016935 | Potato | nucleus | 77.17 | 88.29 |
| Solyc06g051660.1.1 | Tomato | nucleus | 64.57 | 67.77 |
| PGSC0003DMT400003078 | Potato | nucleus | 51.18 | 54.62 |
| KRH31142 | Soybean | nucleus | 50.39 | 52.03 |
| CDY61710 | Canola | nucleus | 44.88 | 50.89 |
| AT2G40080.1 | Thale cress | nucleus | 44.09 | 50.45 |
| Bra004991.1-P | Field mustard | nucleus | 44.88 | 50.44 |
| CDX74810 | Canola | nucleus | 44.88 | 50.44 |
| Bra000165.1-P | Field mustard | nucleus | 44.88 | 50.0 |
| CDY07627 | Canola | nucleus | 44.88 | 50.0 |
| CDY60339 | Canola | nucleus | 44.88 | 50.0 |
| CDY66370 | Canola | nucleus | 44.09 | 49.56 |
| CDY20512 | Canola | nucleus | 44.09 | 49.56 |
| CDY20515 | Canola | cytosol | 43.31 | 48.67 |
| CDY07051 | Canola | nucleus | 42.52 | 47.37 |
| Bra017035.1-P | Field mustard | nucleus | 42.52 | 47.37 |
| KRG97737 | Soybean | nucleus, plastid | 45.67 | 42.34 |
| VIT_13s0067g00860.t01 | Wine grape | nucleus | 44.88 | 39.31 |
| PGSC0003DMT400025499 | Potato | nucleus | 28.35 | 36.73 |
| PGSC0003DMT400050352 | Potato | cytosol | 30.71 | 35.78 |
| PGSC0003DMT400078042 | Potato | nucleus | 36.22 | 34.33 |
| PGSC0003DMT400030304 | Potato | cytosol | 29.13 | 32.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089865 | EnsemblPlantsGene:PGSC0003DMG400039436 | EntrezGene:102603103 | GO:GO:0008150 | GO:GO:0042753 | InterPro:EARLY_FLOWERING_4 |
| PANTHER:PTHR33469 | PANTHER:PTHR33469:SF5 | PFAM:PF07011 | PGSC:PGSC0003DMG400039436 | RefSeq:XP_006338849.1 | UniParc:UPI00029547A3 |
| UniProt:M1DJ36 | MapMan:27.1.6.3.3 | : | : | : | : |
Description
EARLY flowering 4 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039436]
Coordinates
chr6:+:26362428..26362811
Molecular Weight (calculated)
14841.0 Da
IEP (calculated)
7.185
GRAVY (calculated)
-1.187
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTFKRHRQ TLAKPKSLTT NDRRRPHDNG DLSIEEGNSE MWNNFSNRFR QVQSVLDRNR SLIQQVNENH QSRTNDNMVQ NVSLIQELNG NISKVVSLYS
101: DISTNFSTMF GQEHDAIGDE TNNRRHH
101: DISTNFSTMF GQEHDAIGDE TNNRRHH
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.