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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • nucleus 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400078042 Potato nucleus 95.52 95.52
Solyc11g028200.1.1 Tomato cytosol, nucleus, plastid 95.52 95.52
VIT_06s0004g06600.t01 Wine grape nucleus 38.06 40.8
Solyc06g051660.1.1 Tomato nucleus 33.58 37.19
Solyc06g051680.1.1 Tomato nucleus 33.58 36.59
AT2G29950.1 Thale cress cytosol 33.58 36.0
Solyc07g041340.1.1 Tomato cytosol 28.36 34.86
Solyc12g049290.1.1 Tomato cytosol 28.36 33.33
CDX95740 Canola cytosol, mitochondrion, nucleus 32.84 31.21
Bra000468.1-P Field mustard cytosol 31.34 30.43
KRH17036 Soybean cytosol 37.31 29.76
CDX83315 Canola cytosol 28.36 27.54
Protein Annotations
EnsemblPlants:Solyc06g076960.1.1EnsemblPlantsGene:Solyc06g076960.1GO:GO:0008150GO:GO:0042753InterPro:EARLY_FLOWERING_4PANTHER:PTHR33469
PANTHER:PTHR33469:SF1PFAM:PF07011SEG:segUniParc:UPI000276558DUniProt:K4CA54MapMan:27.1.6.3.3
Description
No Description!
Coordinates
chr6:+:47829486..47829890
Molecular Weight (calculated)
15358.6 Da
IEP (calculated)
4.249
GRAVY (calculated)
-0.756
Length
134 amino acids
Sequence
(BLAST)
001: MDDALQALTE LSNLSRHPLN GGEFNGLNDV DGEEEEEYDT EAWETITKCF REVQSVLDQN RALIQQVNEN HQSKLRDNLV KNVALIRDIN SNISKVSRLY
101: SDLSVDFCNI VNRRRELALF ESKNRDDNVD SAES
Best Arabidopsis Sequence Match ( AT2G40080.1 )
(BLAST)
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
Arabidopsis Description
ELF4Protein EARLY FLOWERING 4 [Source:UniProtKB/Swiss-Prot;Acc:O04211]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.