Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G211400.1 | Wheat | cytosol | 98.42 | 98.42 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 97.29 | 98.17 |
| Os03t0268100-01 | Rice | nucleus | 83.94 | 83.37 |
| EER92496 | Sorghum | nucleus | 81.45 | 81.63 |
| HORVU4Hr1G060500.11 | Barley | cytosol, nucleus | 87.78 | 78.23 |
| Zm00001d047834_P004 | Maize | cytosol | 75.34 | 70.55 |
| Zm00001d028569_P002 | Maize | cytosol | 79.86 | 60.76 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 58.82 | 59.23 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 55.43 | 54.81 |
| CDY22263 | Canola | cytosol | 12.22 | 54.55 |
| AT5G59210.1 | Thale cress | nucleus | 52.26 | 53.23 |
| CDY02864 | Canola | extracellular, golgi, vacuole | 37.78 | 51.07 |
| KRH10215 | Soybean | cytosol | 50.0 | 51.04 |
| KRH23112 | Soybean | nucleus | 49.77 | 50.81 |
| Solyc09g055760.2.1 | Tomato | nucleus | 48.42 | 48.53 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G093700.1 | EnsemblPlantsGene:TraesCS4A01G093700 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:-:101510234..101513811
Molecular Weight (calculated)
50561.9 Da
IEP (calculated)
4.886
GRAVY (calculated)
-0.846
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQHASRGR RTLEEIRQKR AAERMQQQTP AATASHGDPH GNQRAAAELL ARVQQLENGN LELERENQML MSKFAEKEVE KDSLVNRLND LEKNVVPSLK
101: KALNDISLEK DAAVVAKEDA LAQLRSMKKR LREAEEEQYR AEEDSASLRA QLNTLQQQVM SNSYSGYAVG TSSEQTLAME KEIQDLQAQL KQESLLRQQE
201: QQKLAEETLL RQQDQQRLAE EQSRTTSLAA EKREMEEKIA ALTKKSSEEA SEFAARKAFS MQDREKLENQ LHDMALMVER LEGSRQKLLM EIDSQSLEIE
301: NLFEENSVLS TSYQEAMSVT MQWENQVKDC LKQNEELRLH LEKLRIEQAN LLKTNNTSVQ LDGQSETSIP PELVTENLSL KDELVKEQSR SEGLSAEIMK
401: LSAQLRKAVQ AQNNLTRLYR PVLKDIEGNL MKMKQETYAT IL
101: KALNDISLEK DAAVVAKEDA LAQLRSMKKR LREAEEEQYR AEEDSASLRA QLNTLQQQVM SNSYSGYAVG TSSEQTLAME KEIQDLQAQL KQESLLRQQE
201: QQKLAEETLL RQQDQQRLAE EQSRTTSLAA EKREMEEKIA ALTKKSSEEA SEFAARKAFS MQDREKLENQ LHDMALMVER LEGSRQKLLM EIDSQSLEIE
301: NLFEENSVLS TSYQEAMSVT MQWENQVKDC LKQNEELRLH LEKLRIEQAN LLKTNNTSVQ LDGQSETSIP PELVTENLSL KDELVKEQSR SEGLSAEIMK
401: LSAQLRKAVQ AQNNLTRLYR PVLKDIEGNL MKMKQETYAT IL
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ
Arabidopsis Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.