Factsheet for TraesCS1D01G040800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36290.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G039200.1	Wheat	cytosol	89.37	98.18
TraesCS1B01G051700.2	Wheat	cytosol	95.52	95.67
HORVU1Hr1G006770.6	Barley	cytosol	93.69	89.81
Os10t0181700-01	Rice	cytosol, plastid	82.56	81.61
KXG24418	Sorghum	cytosol	79.9	80.3
Zm00001d024625_P002	Maize	cytosol	78.57	80.17
TraesCS7D01G345800.1	Wheat	cytosol	80.73	78.9
GSMUA_Achr4P18400_001	Banana	cytosol	26.08	76.21
GSMUA_Achr4P18410_001	Banana	extracellular	22.26	73.63
VIT_04s0023g02740.t01	Wine grape	cytosol	54.49	51.17
PGSC0003DMT400009101	Potato	plastid	8.14	49.0
KRH08132	Soybean	cytosol	50.83	48.57
AT4G36280.1	Thale cress	cytosol	50.0	48.08
Solyc02g084700.2.1	Tomato	cytosol	51.16	47.83
AT4G36290.1	Thale cress	cytosol	49.67	47.09
AT4G36270.1	Thale cress	cytosol	37.71	46.71
KRH69835	Soybean	cytosol	50.33	45.98
CDY59688	Canola	golgi, plasma membrane, plastid	12.96	44.07
TraesCS3D01G202400.1	Wheat	cytosol	40.03	37.13
CDY59720	Canola	endoplasmic reticulum, extracellular	15.12	36.26
TraesCS3D01G322900.1	Wheat	plastid	38.87	32.55
TraesCS2D01G272300.3	Wheat	nucleus	41.36	29.36
Bra011676.1-P	Field mustard	cytosol	50.83	23.94
CDX75568	Canola	cytosol	50.66	22.64
CDX69218	Canola	cytosol	50.33	22.43
TraesCS7D01G235400.1	Wheat	cytosol	38.87	22.24
TraesCS7D01G393200.1	Wheat	cytosol	19.1	15.13

Protein Annotations

EnsemblPlants:TraesCS1D01G040800.1	EnsemblPlantsGene:TraesCS1D01G040800	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF46	PFAM:PF13589	SEG:seg	SUPFAM:SSF55874
TIGR:cd00075	MapMan:12.5.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:19885289..19896821

Molecular Weight (calculated)

67553.3 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.422

Length

602 amino acids

Sequence
(BLAST)

001: MPAVMSGGTA GVDGGGRSLD CRSFWKAGAS ETPSAPIREF HDALETGDFD RARVHPKFLH TNATSHKWAF GAISELLDNA VDEICNGATF IKVDKSTNTK
101: DNSPMLVFQD DGGGMDPEGV RQCMSLGFST KKSKTTIGQY GNGFKTSTMR LGADAIVFTR AIRENNVTLS IGLLSYTFLR RTMKDDIVVP MLDFVVQDGQ
201: IAPLVYGSQG DWDSSLKIIL DWSPFSSKEE LLQQFEDMDS HGTKVLIYNL WMNDDGLLEL DFDDDDEDIL LRDQGQNSGA STKVQKEIIQ QHISHRLRFS
301: LRAYSSILYL KKFENFQIIL RGKPVEQINI ANELKFKKVV TYKPQVAYDS QVVSVRVDIG FAKEAPVLGI FGINVYHKNR LIMPFWKVLQ EASSRGRSVI
401: GVLEANFIEP AHDKQDFERT PLFIRLETKL KQIIVDYWKE KCHLIGYQPI DPKLRSQYKA ALKDSGGPGV KIRHEASTAQ KTGGHLSNLL PQTYDDEAAF
501: RLTANRAGSA LHSSGQGSMD SAGLEEDLVD IGSLGVLDPN CNEKLSEENL VLFTRREDLR QRDTQLKQTI GELEHELEET RRKCSQLAAE LQLRRSQQQH
601: YM

Best Arabidopsis Sequence Match ( AT4G36280.1 )
(BLAST)

001: MPPMAKNAAV TDVVHLDSDS DSDNGVVGGR ESASTIAGAA TMAPRETLEC RSFWKAGDYF VIPNVVTPTA PGMLEHARVH PRFLHSNATS HKWAFGAIAE
101: LLDNAVDEIQ NGATFVKIDK INIVKDNSPA LVFQDDGGGM DPAGLRKCMS LGYSSKKSNT TIGQYGNGFK TSTMRLGADA IVFSRSTRGG TSTQSVGILS
201: YTFLRKTGQD DVTVPMIDID ISKERPQPII YGSPEDWAAN LEILLKWSPF STEDELLQQF EDVGTHGTKV IIYNLWLNDE GIYELSFDDD EEDIRLRDES
301: VNDGKRLHHK ILELRSHISY HLRYSLRAYA SMLYLKKFKN FKIIIRGIPV EQFNIADGFR FPEIIKYKPH TATTEQASTE IKIGFVKEAP KLAICGFNVY
401: HKNRLIRPFW KVTMGGDSTG HGVVGVLEAN FIEPAHDKQD FERSSLFQRL EARLKKIVYS YWYSHCHLLG YHKYQMPADK SKKIAIPDQP PTISTVNPSP
501: LPSDKISQGG PIIREINLSN ATSSRTVAFA SPHLRNSTGL RSNFQPVQLN PQPTAADTGN NLDGKSAGEI RQENLQLFMR CEEYIKKENE TEQTVKSLEK
601: ELEEFKSKCA HLALLVDAKK KEMQQA

Arabidopsis Description

MORC2Protein MICRORCHIDIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5FV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.