Factsheet for TraesCS1B01G051700.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36290.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G039200.1	Wheat	cytosol	88.35	96.9
TraesCS1D01G040800.1	Wheat	cytosol	95.67	95.52
HORVU1Hr1G006770.6	Barley	cytosol	94.51	90.45
Os10t0181700-01	Rice	cytosol, plastid	82.53	81.44
Zm00001d024625_P002	Maize	cytosol	78.87	80.34
TraesCS7B01G249900.1	Wheat	cytosol	81.86	79.87
KXG24418	Sorghum	cytosol	79.53	79.8
GSMUA_Achr4P18400_001	Banana	cytosol	25.96	75.73
GSMUA_Achr4P18410_001	Banana	extracellular	21.96	72.53
VIT_04s0023g02740.t01	Wine grape	cytosol	54.74	51.33
KRH08132	Soybean	cytosol	50.58	48.25
PGSC0003DMT400009101	Potato	plastid	7.99	48.0
AT4G36280.1	Thale cress	cytosol	49.58	47.6
AT4G36290.1	Thale cress	cytosol	49.92	47.24
Solyc02g084700.2.1	Tomato	cytosol	50.58	47.2
AT4G36270.1	Thale cress	cytosol	37.94	46.91
KRH69835	Soybean	cytosol	50.25	45.83
CDY59688	Canola	golgi, plasma membrane, plastid	13.48	45.76
TraesCS3B01G231900.1	Wheat	cytosol	39.77	36.83
CDY59720	Canola	endoplasmic reticulum, extracellular	14.97	35.86
TraesCS3B01G359600.1	Wheat	cytosol	38.94	33.24
TraesCS2B01G291200.1	Wheat	nucleus	41.1	31.31
Bra011676.1-P	Field mustard	cytosol	50.75	23.87
CDX75568	Canola	cytosol	50.58	22.57
CDX69218	Canola	cytosol	50.25	22.35
TraesCS7B01G133500.2	Wheat	cytosol	39.1	21.44
TraesCS7B01G299600.1	Wheat	cytosol	18.8	14.87

Protein Annotations

EnsemblPlants:TraesCS1B01G051700.2	EnsemblPlantsGene:TraesCS1B01G051700	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF46	PFAM:PF13589	SEG:seg	SUPFAM:SSF55874
TIGR:cd00075	MapMan:12.5.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:31891497..31904336

Molecular Weight (calculated)

67484.1 Da

IEP (calculated)

5.973

GRAVY (calculated)

-0.449

Length

601 amino acids

Sequence
(BLAST)

001: MAGGASGVDG GGRSLDCRSF WKAGASEGPS APIREFHDAL ETGDFDRARV HPKFLHTNAT SHKWAFGAIS ELLDNAVDEI CNGATFIKVD KSTNTKDNSP
101: MLVFQDDGGG MDPEGVRQCM SLGFSTKKSK TTIGQYGNGF KTSTMRLGAD AIVCTRAIRE SKVTLSIGLL SYTFLRRTMK DDIVVPMLDF EVQDGHIAPL
201: VYGSQGDWDS SLKIILDWSP FSSMEELLQQ FEDMDSHGTK VVIYNLWMND DGLLELDFDD DDEDILLRDQ GQNSGASTKI QKEIIQQHIS HRLRFSLRAY
301: SSILYLKKFE NFQIILRGKP VEQINIADEL KFKKVVTYKP QVSHDSQVVS VKVDIGFAKE APVLGIFGIN VYHKNRLIMP FWKVLQEASS RGRSVIGVLE
401: ANFIEPAHDK QDFERTPLFI RLETKLKQII VDYWKEKCHL IGYQPIDPKL RSQYKAALQD SGGPRAKIRH EASTAQKAGG HLSNLLPQTY DDVEAFRLTA
501: NRAGSALHSS GQAQEDSMDS AGLEEDLVDI GSLGVLDPNC NEKLSEENLV LFTRREDLRQ RDTQLKQTIG ELEHELEETR RKCSQLAAEL QLRRSQQQHY
601: M

Best Arabidopsis Sequence Match ( AT4G36290.1 )
(BLAST)

001: MAKNYTVADV VNIDSDSDSD DDNGGVIGMV PSLASLIENQ KVSIADAATV APRETLECRS FWKAGENFVI PSSVTLTAIG MVEHARVHPK FLHSNATSHK
101: WAFGAIAELL DNAVDEIQNG ATVVKIDKIN IVKDNTPALV FQDNGGGMDP NGIRKCMSLG YSSKKSNTTI GQYGNGFKTS TMRLGADAMV FSRSTRGGKS
201: TQSIGLLSYT FLRKTGQDDV IVPMIDFDIS SDSPQPIIYG SPGDWSTNLN ILLKWSPFST MVELLQQFED IGTHGTKVII YNLWLNDEGI YELSFDDDDV
301: DIRLRDENAQ DGKRLHAKTL EVRSHISYRY RHSLRAYISM LYLKKFKNFK IILRGVSVAQ FNIADEFRHP ETIMYKPQAA AVDYAATGIK VGFIKEAPKL
401: PICGFNVYHK NRLIRPFWKV VLEGSTRGNG VMGVLEANFI EPAHDKQDFE RSSLFLRLEA RLKRITSDYW QNHCHIFGYQ TAQIPADKSK RTVIPDQPPT
501: VNTYNPSPLP SDRISHGGPI IREINLSNAT SSRTAAVAAP HLRNYTGLRN NFQPVQLNPQ PPAAGDTGNN LVGKLAAEIR EENLQLFMRC EEYVKKENEV
601: EQTVKSLEKE LEEIKSKCAQ LALLVDAKKK EMQQV

Arabidopsis Description

MORC1Protein MICRORCHIDIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.