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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • golgi 1
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:golgi
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400017657

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G36290.1 PGSC0003DMT400017657 AT5G11980.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P18410_001 Banana extracellular 43.0 23.63
CDY59688 Canola golgi, plasma membrane, plastid 34.0 19.21
AT4G36270.1 Thale cress cytosol 54.0 11.11
Solyc02g084700.2.1 Tomato cytosol 66.0 10.25
AT4G36280.1 Thale cress cytosol 57.0 9.11
Zm00001d024625_P002 Maize cytosol 52.0 8.81
VIT_04s0023g02740.t01 Wine grape cytosol 56.0 8.74
KRH08132 Soybean cytosol 54.0 8.57
KXG24418 Sorghum cytosol 51.0 8.51
TraesCS7D01G345800.1 Wheat cytosol 52.0 8.44
TraesCS7B01G249900.1 Wheat cytosol 52.0 8.44
TraesCS7A01G338600.1 Wheat cytosol, plastid 52.0 8.44
HORVU7Hr1G083280.20 Barley cytosol 51.0 8.42
Os10t0181700-01 Rice cytosol, plastid 51.0 8.37
AT4G36290.1 Thale cress cytosol 53.0 8.35
TraesCS1D01G040800.1 Wheat cytosol 49.0 8.14
TraesCS1A01G039200.1 Wheat cytosol 44.0 8.03
TraesCS1B01G051700.2 Wheat cytosol 48.0 7.99
HORVU1Hr1G006770.6 Barley cytosol 48.0 7.64
KRH69835 Soybean cytosol 49.0 7.44
PGSC0003DMT400088594 Potato nucleus 46.0 6.17
CDY59720 Canola endoplasmic reticulum, extracellular 13.0 5.18
PGSC0003DMT400072308 Potato nucleus 48.0 5.1
GSMUA_Achr4P18400_001 Banana cytosol 9.0 4.37
Bra011676.1-P Field mustard cytosol 55.0 4.3
CDX69218 Canola cytosol 55.0 4.07
CDX75568 Canola cytosol 54.0 4.01
Protein Annotations
EnsemblPlants:PGSC0003DMT400009101EnsemblPlantsGene:PGSC0003DMG400003538GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR23336
PANTHER:PTHR23336:SF18PFAM:PF13589PGSC:PGSC0003DMG400003538TMHMM:TMhelixUniParc:UPI0002952E61UniProt:M0ZVL2
MapMan:12.5.1.2:::::
Description
CRT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003538]
Coordinates
chr2:-:39954129..39955226
Molecular Weight (calculated)
11219.7 Da
IEP (calculated)
10.022
GRAVY (calculated)
0.066
Length
100 amino acids
Sequence
(BLAST)
1: MDPDRLRKCM SLGYSSKTSN STIGQYGNGF KTSTMRLGAD VIVFSRSSRS GYLLFPPLCL HISIYQSILR IGPRSRTSLL HLLDYTGYIV VVYIASLTYQ
Best Arabidopsis Sequence Match ( AT4G36270.1 )
(BLAST)
001: MDPDGLRKCM SLGYSSKKSN TTIGQYGNGF KTSTMRLGAD DIVFTRSTRG GKSTQSVGLL SYTFLRKTGQ DDVVVPMIRY AMQIDIDTSK ERPQPIIYGS
101: AEDWAASLEI ILKWSPFSTE GELWQQRSVL LTFLFPSSTH QLEDIGTHGT KVIIYNLWLN DEGIYELSFH DDNEDIRLRD ESVHDSKRAY ASMLYLKRFN
201: NFKIILRGIP VEQFNIADEL RLPETIKYNP HTTKEKAPTE IKVGFIKEAP KLAVCGFNVY HKNRLIRPFW KVTMGGERRG SGVVGVLEAN FIEPAHDKQD
301: FERSSLFQRL EARLKKIVSN YWNTHCHVFG YCTYGMPADK SKRIAIPDQP PTVNTFNPLP LPSDEISQGG QIIRDQPPTV NTFNPLPLPS DRVSQGGPII
401: REISLSNATS SRIAAVDTEN NLVGKSAHEI SEENIQLFMR CEEYVKKETE LEQTVSNLAK ELEETKSKCA RLALLVDAKR REMQQV
Arabidopsis Description
ATP binding [Source:TAIR;Acc:AT4G36270]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.