Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009920.1.1 | Tomato | nucleus | 92.23 | 88.66 |
| PGSC0003DMT400072308 | Potato | nucleus | 64.21 | 50.85 |
| Zm00001d053269_P001 | Maize | cytosol | 16.89 | 48.28 |
| PGSC0003DMT400009101 | Potato | plastid | 6.17 | 46.0 |
| CDY52039 | Canola | plastid | 41.96 | 45.56 |
| TraesCS2B01G291200.1 | Wheat | nucleus | 47.86 | 45.25 |
| EES10563 | Sorghum | nucleus | 47.72 | 45.18 |
| CDX84021 | Canola | plastid | 41.42 | 44.78 |
| Zm00001d004118_P003 | Maize | nucleus | 47.72 | 44.61 |
| GSMUA_Achr11P... | Banana | nucleus | 49.2 | 44.38 |
| TraesCS2A01G273000.2 | Wheat | nucleus | 47.19 | 43.62 |
| AT5G13130.1 | Thale cress | nucleus | 41.29 | 43.5 |
| KXG30181 | Sorghum | nucleus | 46.78 | 43.35 |
| HORVU2Hr1G066650.2 | Barley | cytosol | 45.84 | 42.54 |
| Os02t0469300-02 | Rice | nucleus | 45.17 | 41.97 |
| TraesCS2D01G272300.3 | Wheat | nucleus | 47.19 | 41.51 |
| CDX69668 | Canola | nucleus, plastid | 43.3 | 38.82 |
| CDX97228 | Canola | nucleus, plastid | 43.16 | 38.8 |
| Bra016690.1-P | Field mustard | plastid | 42.09 | 38.34 |
| Bra008854.1-P | Field mustard | nucleus, plastid | 29.89 | 35.85 |
| Zm00001d053268_P001 | Maize | cytosol | 22.25 | 31.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400088594 | EnsemblPlantsGene:PGSC0003DMG400038165 | EntrezGene:102578288 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf |
| InterPro:IPR036890 | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF7 | PFAM:PF13589 | PGSC:PGSC0003DMG400038165 |
| RefSeq:XP_015159094.1 | SEG:seg | SUPFAM:SSF55874 | UniParc:UPI000295CE64 | UniProt:M1DGA9 | MapMan:12.5.1.2 |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038165]
Coordinates
chr1:-:8839396..8844946
Molecular Weight (calculated)
84539.1 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.723
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTHSIKQE IIDLDDIDDE NTAMICVSSS SGGRRGSNFS RFFDSDSDDD DNDNDNDLGL SPLKKMKVEA ALPVGFLDPL PPEERVAFNR SLEVVVRNNT
101: ELGVGTEKVV VTSNKQFWKA GDYEGIDGGF AAGHAEGMDH VRVHPKFLHS NATSHKWALG AFAELLDNAM DEVCNGATYV SVDVLDNKKE KGKMILVEDN
201: GGGMTPDKMR QCMSLGYSAK SKLANTIGQY GNGFKTSSMR LGGDVIVFSR CQGKDGLSTT QSVGMLSYTF LRTTGKEDII VPMIDFVKRG EIWEMLVRST
301: PDDWKRNSDT IVQWSPFESE EDLFLQFELL DNQGTRIIIY NLWEDEKGDT ELDFDTDPHD IQIKGVSRDE KKIEMAKIYP NSRHFLTYQH SLRSYASILY
401: LRLSPGFQII LRGKDVEHHN LINDMNLAKK NTYRPQPIGD ETSKDPNAVA VVTIGFVKDA EHHIDVQGFN VYHKNRLIKP FWRVWNAAGS DGRGAIGVLE
501: ANFVKPAHDK QDFERTIVLA RLEARLQFMQ KQYWRDNCHE IGYADRRNIK NSVSSEEETN TSAKSNSCSR FSSNVHTTNR DVNTTNRDVP TTSRDGPTTS
601: YDKSKSKYTG GEHKTGQVQS SIQATNQTMW RELSNRPTRQ IPTNLSVKIQ DTSSNLREEN HVTKDRLQQA LRDLQYEKNK NKSLEGQLKA AQRLITDLNS
701: NHDNLAHMLL EERRRSRESS VINEELRDKV KLLENRMPFT SVKREH
101: ELGVGTEKVV VTSNKQFWKA GDYEGIDGGF AAGHAEGMDH VRVHPKFLHS NATSHKWALG AFAELLDNAM DEVCNGATYV SVDVLDNKKE KGKMILVEDN
201: GGGMTPDKMR QCMSLGYSAK SKLANTIGQY GNGFKTSSMR LGGDVIVFSR CQGKDGLSTT QSVGMLSYTF LRTTGKEDII VPMIDFVKRG EIWEMLVRST
301: PDDWKRNSDT IVQWSPFESE EDLFLQFELL DNQGTRIIIY NLWEDEKGDT ELDFDTDPHD IQIKGVSRDE KKIEMAKIYP NSRHFLTYQH SLRSYASILY
401: LRLSPGFQII LRGKDVEHHN LINDMNLAKK NTYRPQPIGD ETSKDPNAVA VVTIGFVKDA EHHIDVQGFN VYHKNRLIKP FWRVWNAAGS DGRGAIGVLE
501: ANFVKPAHDK QDFERTIVLA RLEARLQFMQ KQYWRDNCHE IGYADRRNIK NSVSSEEETN TSAKSNSCSR FSSNVHTTNR DVNTTNRDVP TTSRDGPTTS
601: YDKSKSKYTG GEHKTGQVQS SIQATNQTMW RELSNRPTRQ IPTNLSVKIQ DTSSNLREEN HVTKDRLQQA LRDLQYEKNK NKSLEGQLKA AQRLITDLNS
701: NHDNLAHMLL EERRRSRESS VINEELRDKV KLLENRMPFT SVKREH
001: MEPIVKQENP VTTSTLSTWK PAARNKTIPP PESVIELSSS NEGSELGENL DEIAEIQSVD RTGGDDVSGT KRARSDSIAS PAKRLAVMIP DDDEEFLLST
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
Arabidopsis Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:TAIR;Acc:AT5G50780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.