Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g081760.1.1 | Tomato | nucleus | 80.68 | 89.83 |
| PGSC0003DMT400088594 | Potato | nucleus | 50.85 | 64.21 |
| PGSC0003DMT400009101 | Potato | plastid | 5.1 | 48.0 |
| CDY52039 | Canola | plastid | 34.93 | 47.89 |
| CDX84021 | Canola | plastid | 34.93 | 47.68 |
| AT5G13130.1 | Thale cress | nucleus | 35.14 | 46.75 |
| GSMUA_Achr11P... | Banana | nucleus | 40.13 | 45.71 |
| EES10563 | Sorghum | nucleus | 37.79 | 45.18 |
| TraesCS2B01G291200.1 | Wheat | nucleus | 37.79 | 45.12 |
| Zm00001d004118_P003 | Maize | nucleus | 38.11 | 44.99 |
| Zm00001d053269_P001 | Maize | cytosol | 12.21 | 44.06 |
| TraesCS2A01G273000.2 | Wheat | nucleus | 37.47 | 43.74 |
| HORVU2Hr1G066650.2 | Barley | cytosol | 36.62 | 42.91 |
| Os02t0469300-02 | Rice | nucleus | 36.41 | 42.71 |
| KXG30181 | Sorghum | nucleus | 36.2 | 42.36 |
| TraesCS2D01G272300.3 | Wheat | nucleus | 37.47 | 41.63 |
| Bra016690.1-P | Field mustard | plastid | 35.14 | 40.42 |
| CDX97228 | Canola | nucleus, plastid | 35.14 | 39.88 |
| CDX69668 | Canola | nucleus, plastid | 35.14 | 39.78 |
| Bra008854.1-P | Field mustard | nucleus, plastid | 24.63 | 37.3 |
| Zm00001d053268_P001 | Maize | cytosol | 17.41 | 31.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072308 | EnsemblPlantsGene:PGSC0003DMG400028138 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF7 | PFAM:PF13589 | PGSC:PGSC0003DMG400028138 | SEG:seg |
| SUPFAM:SSF55874 | UniParc:UPI000294CB40 | UniProt:M1CQ22 | MapMan:12.5.1.2 | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028138]
Coordinates
chr10:-:56221993..56224821
Molecular Weight (calculated)
106983.0 Da
IEP (calculated)
8.210
GRAVY (calculated)
-0.746
Length
942 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIKQELIDL TDDLDDTQTT RNTTMHYMIP VKNNGFDDFQ GSPMKKIKLE SPVFVAPLSI CPYNSNELVV ASPVSVPVVT SCKQFWKAGD YDGKKEGCAG
101: FFSGAYDQTV GMDHVRVHPK FLHSNATSHK WALGAFAELL DNAMDEVCNG ATYVSVDVMD NKKDKGSKML LVEDNGGGMT PDRMRQCMSL GYSAKSKLAN
201: TIGQYGNGFK TSSMRLGGDV IVFSRGRDRA TNMLTQSVGM LSYTFLRSTG KEDIVVPMID FVKRGGTWEM LVRSTADVWK RNSETIVQWS PYESKNDLFQ
301: QFELLKGDQG TRIIIYNLWE DEEGGTELDF DTDPHDIQIR GVSRDEKKIE MAKEYPNSRH FLTYQHSLRS YASILYLRLA PGFRIILRGK DVEHHNLVND
401: MMFSEEITYR PQSVGYETFV ATGTIGFVKD AKHHIDVQGF NVYHKNRLIK PFWRVWNAAG SDGRGVIGVL EANFVEPAHD KQGFERTIVL ARLEARLQFI
501: QKKYWSSNCH FIGYAKRRNV KNTAVSPDQE QPNVGHTTCH DDGSNLKSSR VERERGPVHS SIKDSSVHEA SQVYVGSKKV TQPVQFSIQA NQNPSISNVS
601: RRTCHDDTSK SKSTVGEHEN TVPIHSSVQE RNQTMSGEQT QQVCTLNRQP DETPENSSAP KRKSCSPFIS NAEYTTYHYD TSKSKSIGDQ TQQASTSNRQ
701: TLGNSVVKME DTMPNDLRVE SSSTKNSLQQ VLHRLQQERA RSETLARMLI EEQARAAKEE QSIRQQERAR SETLARMLIE EQARAAKEEQ SIRQQERARS
801: ETLARMLIEE QARAAKEEQS IRQQERARSE TLARMLIEEQ ARAAKEEQSI RQQERARSET LARMLIEEQA RAAKEEQSIR QQERARSETL ARMLIEERAR
901: AAKEEQSLRN KLKDASVITQ DLLNKVRLLE SSRMNATCKN ER
101: FFSGAYDQTV GMDHVRVHPK FLHSNATSHK WALGAFAELL DNAMDEVCNG ATYVSVDVMD NKKDKGSKML LVEDNGGGMT PDRMRQCMSL GYSAKSKLAN
201: TIGQYGNGFK TSSMRLGGDV IVFSRGRDRA TNMLTQSVGM LSYTFLRSTG KEDIVVPMID FVKRGGTWEM LVRSTADVWK RNSETIVQWS PYESKNDLFQ
301: QFELLKGDQG TRIIIYNLWE DEEGGTELDF DTDPHDIQIR GVSRDEKKIE MAKEYPNSRH FLTYQHSLRS YASILYLRLA PGFRIILRGK DVEHHNLVND
401: MMFSEEITYR PQSVGYETFV ATGTIGFVKD AKHHIDVQGF NVYHKNRLIK PFWRVWNAAG SDGRGVIGVL EANFVEPAHD KQGFERTIVL ARLEARLQFI
501: QKKYWSSNCH FIGYAKRRNV KNTAVSPDQE QPNVGHTTCH DDGSNLKSSR VERERGPVHS SIKDSSVHEA SQVYVGSKKV TQPVQFSIQA NQNPSISNVS
601: RRTCHDDTSK SKSTVGEHEN TVPIHSSVQE RNQTMSGEQT QQVCTLNRQP DETPENSSAP KRKSCSPFIS NAEYTTYHYD TSKSKSIGDQ TQQASTSNRQ
701: TLGNSVVKME DTMPNDLRVE SSSTKNSLQQ VLHRLQQERA RSETLARMLI EEQARAAKEE QSIRQQERAR SETLARMLIE EQARAAKEEQ SIRQQERARS
801: ETLARMLIEE QARAAKEEQS IRQQERARSE TLARMLIEEQ ARAAKEEQSI RQQERARSET LARMLIEEQA RAAKEEQSIR QQERARSETL ARMLIEERAR
901: AAKEEQSLRN KLKDASVITQ DLLNKVRLLE SSRMNATCKN ER
001: MEPIVKQENP VTTSTLSTWK PAARNKTIPP PESVIELSSS NEGSELGENL DEIAEIQSVD RTGGDDVSGT KRARSDSIAS PAKRLAVMIP DDDEEFLLST
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
Arabidopsis Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:TAIR;Acc:AT5G50780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.