CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008854.1-P	Field mustard	nucleus, plastid	74.28	99.36
CDX97228	Canola	nucleus, plastid	96.75	96.99
AT5G13130.1	Thale cress	nucleus	60.82	71.47
CDY52039	Canola	plastid	57.45	69.58
CDX84021	Canola	plastid	57.33	69.13
CDX71661	Canola	cytosol	11.42	57.58
CDY03400	Canola	nucleus	38.7	47.85
CDY34330	Canola	nucleus	38.82	47.78
CDY11045	Canola	nucleus	39.06	46.63
CDX92664	Canola	nucleus	38.58	46.39
CDX84876	Canola	nucleus	39.66	43.54
PGSC0003DMT400088594	Potato	nucleus	38.82	43.3
CDY45818	Canola	nucleus	39.42	42.32
EES10563	Sorghum	nucleus	39.06	41.24
GSMUA_Achr11P...	Banana	nucleus	40.99	41.23
TraesCS2B01G291200.1	Wheat	nucleus	39.06	41.19
Solyc01g009920.1.1	Tomato	nucleus	38.22	40.98
Zm00001d004118_P003	Maize	nucleus	38.82	40.48
CDX81912	Canola	nucleus	12.02	39.84
TraesCS2A01G273000.2	Wheat	nucleus	38.46	39.65
HORVU2Hr1G066650.2	Barley	cytosol	37.98	39.3
Solyc10g081760.1.1	Tomato	nucleus	39.54	38.89
KXG30181	Sorghum	nucleus	37.26	38.51
TraesCS2D01G272300.3	Wheat	nucleus	38.46	37.74
Zm00001d053269_P001	Maize	cytosol	11.78	37.55
Os02t0469300-02	Rice	nucleus	36.18	37.48
PGSC0003DMT400072308	Potato	nucleus	39.78	35.14
CDY21683	Canola	nucleus	26.08	33.7
CDY41018	Canola	nucleus	26.56	32.5
CDY59720	Canola	endoplasmic reticulum, extracellular	9.62	31.87
CDY59688	Canola	golgi, plasma membrane, plastid	6.73	31.64
Zm00001d053268_P001	Maize	cytosol	19.95	31.56
CDX81913	Canola	nucleus	14.06	31.2
CDX69218	Canola	cytosol	26.92	16.58
CDX75568	Canola	cytosol	26.8	16.56

Protein Annotations

EnsemblPlants:CDX69668	EnsemblPlantsGene:GSBRNA2T00135695001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF7	PFAM:PD936484	PFAM:PF13589	ProteinID:CDX69668
ProteinID:CDX69668.1	SUPFAM:SSF55874	UniParc:UPI0004EF32A5	MapMan:12.5.1.2	:	:

Description

BnaA10g20170D

Coordinates

chrLK031790:-:1272419..1276683

Molecular Weight (calculated)

94315.5 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.790

Length

832 amino acids

Sequence
(BLAST)

001: MDSSPKINPK KPMLVVGSTT NPKPYVVTGP PPGFSSKPGL KRYSDDRDSN NLAIKKSRTV VSAQDGKKIV ALDVKPLAIV EADTPRLSRQ FWKAGDDNED
101: EPVPRYCSND AAVRVHPQFL HANATSHKWA LGALAELLDN SLDEVCNGAT YVHVNSATNE KDGKSSILIV EDNGGGMDPG RFRECLSLGY SRKRNMANKV
201: GQYGNGFKTS TMRLGADAIV FSRCRGTNGN KTTQSIGMLS YTFLYETRKC EAIVPTVDFE LVDNTWKEIT YNSTDEWFDN LETIVKWSPY STQDQLFEQF
301: DHLEEQGTRI VIYNLWDDDE GKLELDFDTD PHDIQLRGVN RDEKNIEMAK TYPNSRHFLT YRHSLRSYVS ILYLRLPPNF KIILRGKEVE HHSLLDDMMM
401: TEDKTYRPVR SAECSSNEEM VADLKLGFVK DAHHHIDIQG FNVYHKNRLI KPFWRVWNAA GSDGRGVIGL VEANFIQPAH NKQGFERTAV LAKLENRLLS
501: YQKTYWTSRC HEIGYAPRRK QANHVTSSIE TTRQGDKKSE VPFNNVKHDK GPSSNAAPAR FMQNGQSSGG NQLNSQGATQ PRVVGDRMIP DNRIKIEKHG
601: HGTSFNEARS VNQAAELQKV KDESAKHVAE LQRQRGQLES QNKQLKAKIQ DLEKSKDDSQ KLVSKLLNQL KQSAAKIQDM EKTQKVTDNN SGKLVVELSN
701: QLKQSNSKIQ DLEKTQKFKD DESAKLVNEL KIQKALLEEG LKKVRDGSTK LVDELQREKA MLEEESHKLK QSEAKIQDLE KSQIEVTAIF QEERARRDVI
801: EHDLRKMLRE SSDTIRALTM KVNSLEAQKA KP

Best Arabidopsis Sequence Match ( AT5G13130.1 )
(BLAST)

001: MAESGSTNPK SPSVVPDSTL GGLKRDLRNY HDGDDSNNLS IKKSKTTKME NNCREIVPLD VTPLSIVPPD TPKLSRQFWK AGDDDEAAPV PLYCSNDAAV
101: RVHPQFLHAN ATSHKWALGA LAELLDNSLD EVSNGATYVH VDSTINKRDG KSSILIVEDN GGGMNPSTFR ECLSLGYSRK RNMANRVGQY GNGFKTSTMR
201: LGADAIVFSR SRGINGNNPT QSIGMLSYTF LYETRKCEAI VPTVDYELVD NKWKEIVYNS TNEWLDNLET ILRWSPYLSQ QDLLDQFNHL EEQGTRIVIY
301: NLWEDDEGKM ELDFDTDPHD IQLRGVNRDE KNIDMAKTYP NSRHFLTYRH SLRSYASILY LKRPDNFRII LRGEDVEHHS VLDDMMKIEE KTYKPMRSPE
401: WPDQEEMVAS LKLGFVKDAH HHIDIQGFNV YHKNRLIKPF WRVWNAAGSD GRGVIGILEA NFIQPAHNKQ GFERTVVLAK LESRLVTHQK NYWSSRCHEI
501: GYAPRRKQKN YESSVTETPR PFNNINVVKG SSSSTPVPVR VFRPNVEPSG RNQIPQVETR ERSFDINPEI GAKNRSYYGL GISSFKETGS VNLEAELQKV
601: KQESAKLVSE LQRQKQLLEL QLQESKAKIQ NLEKAQREKE VLELQLKESK ARIQNLENRQ EGVSTIFQQE RARRDVTEDG LRKKLREASD VIDGLRKQVD
701: TFKGKRIL

Arabidopsis Description

MORC5Protein MICRORCHIDIA 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K2G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.